Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.3e-193 678.7 345 100.0
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.9e-182 642.5 345 94.2
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 4.1e-182 641.3 345 93.9
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 9.5e-179 630.2 345 92.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 9.8e-176 620.2 345 90.7
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.9e-175 618.6 345 90.4
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.1e-174 614.8 345 89.6
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.9e-172 608.2 347 89.9
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.1e-171 606.7 347 89.6
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.3e-171 604.7 347 89.6
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 4.1e-166 588.2 345 86.1
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.6e-165 584.7 345 84.9
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.6e-165 584.7 345 85.5
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.0e-164 583.6 345 85.8
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.3e-164 583.2 345 85.5
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 3.3e-163 578.6 346 84.4
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 3.6e-162 575.1 357 82.4
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 1.4e-161 573.2 338 85.5
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.0e-161 571.6 345 83.5
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.0e-161 571.6 345 83.5
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.2e-160 570.1 345 83.5
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.4e-160 568.5 346 83.5
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 5.8e-160 567.8 355 81.7
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.3e-159 566.6 349 83.1
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 3.8e-159 565.1 345 83.2
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 6.4e-159 564.3 345 81.4
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 6.4e-159 564.3 345 82.9
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 6.4e-159 564.3 373 78.3
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.1e-158 563.5 349 82.2
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.9e-158 562.8 346 82.7
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.4e-158 562.4 346 83.2
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 2.4e-158 562.4 345 81.2
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 3.2e-158 562.0 347 83.0
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 4.2e-158 561.6 344 82.3
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 9.3e-158 560.5 348 82.5
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.5e-157 558.5 347 81.3
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 3.5e-157 558.5 345 81.2
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 4.6e-157 558.1 345 81.4
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 6.0e-157 557.8 345 81.4
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 7.8e-157 557.4 356 80.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.0e-156 557.0 345 80.6
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.3e-156 556.6 347 82.4
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.3e-156 556.6 353 81.6
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.7e-156 556.2 346 82.4
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.7e-156 556.2 346 81.8
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 6.6e-156 554.3 346 82.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 8.7e-156 553.9 345 81.7
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.1e-155 553.5 353 81.3
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.5e-155 552.4 346 81.2
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 3.3e-155 552.0 363 79.6
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.3e-155 551.6 345 80.3
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 9.6e-155 550.4 359 80.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.3e-154 550.1 348 79.6
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.3e-154 550.1 345 80.9
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.3e-154 550.1 363 79.1
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 2.8e-154 548.9 337 82.8
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.8e-154 548.1 345 78.8
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 4.8e-154 548.1 348 79.0
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 8.1e-154 547.4 346 80.3
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.8e-153 546.2 349 80.5
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 2.4e-153 545.8 352 78.7
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 4.0e-153 545.0 348 78.7
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 1.2e-152 543.5 346 79.2
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.6e-152 542.3 345 79.7
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 3.4e-152 542.0 351 78.6
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 3.4e-152 542.0 344 79.4
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.5e-152 541.6 333 82.3
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 4.5e-152 541.6 346 78.9
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 4.5e-152 541.6 346 78.9
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 4.5e-152 541.6 346 78.9
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 5.8e-152 541.2 365 76.7
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 7.6e-152 540.8 354 78.8
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 9.9e-152 540.4 348 78.2
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 9.9e-152 540.4 348 78.2
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 9.9e-152 540.4 343 79.3
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 9.9e-152 540.4 353 77.9
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-151 540.0 346 78.9
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.3e-151 540.0 346 78.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.3e-151 540.0 345 78.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.7e-151 539.7 345 78.6
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 8.4e-151 537.3 350 78.6
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 1.4e-150 536.6 346 79.5
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.9e-150 536.2 351 76.9
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.9e-150 536.2 343 78.4
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 3.2e-150 535.4 351 77.2
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 3.2e-150 535.4 347 77.8
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 4.2e-150 535.0 346 79.2
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 4.2e-150 535.0 347 78.1
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.2e-149 533.5 346 78.6
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 1.6e-149 533.1 354 76.8
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.6e-149 533.1 348 76.1
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.1e-149 532.7 348 77.3
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 2.1e-149 532.7 345 78.6
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 2.1e-149 532.7 348 76.1
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 4.6e-149 531.6 345 77.7
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 4.6e-149 531.6 348 75.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 7.9e-149 530.8 354 76.3
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.0e-148 530.4 338 78.7
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.3e-148 529.3 331 81.9
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 2.3e-148 529.3 346 78.0
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 3.0e-148 528.9 355 75.8
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 5.6e-147 524.6 345 77.4
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.6e-146 523.1 347 76.7
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 8.1e-146 520.8 346 77.2
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.1e-145 518.8 346 76.9
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.9e-142 509.6 345 76.8
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 5.5e-142 508.1 367 72.8
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 5.5e-142 508.1 346 76.0
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 5.5e-142 508.1 345 76.5
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 9.6e-139 497.3 386 69.4
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.1e-137 493.8 345 71.9
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 1.1e-137 493.8 348 74.1
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.4e-137 492.7 345 75.4
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-135 486.9 347 72.9
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.3e-135 486.9 347 72.9
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.2e-135 486.1 346 72.0
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.1e-133 479.6 349 70.5
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.3e-132 476.9 349 69.1
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 2.5e-131 472.6 337 71.8
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 2.8e-130 469.2 349 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.7e-130 468.8 332 68.7
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.1e-129 467.2 349 67.0
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.1e-129 465.3 303 75.6
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 4.5e-128 461.8 342 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 5.9e-128 461.5 315 71.4
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.9e-127 459.1 346 72.5
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 5.0e-127 458.4 337 70.6
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.2e-125 453.8 324 71.6
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 4.6e-125 451.8 291 78.7
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 4.6e-125 451.8 291 78.7
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-123 447.2 345 67.2
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.3e-122 443.7 345 68.1
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.1e-121 440.7 315 67.6
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.1e-113 414.1 318 63.5
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.2e-112 410.6 336 61.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 5.9e-112 408.3 275 74.9
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 9.4e-110 401.0 344 58.4
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 2.0e-107 393.3 231 82.7
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 2.9e-103 379.4 255 74.9
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-100 370.2 229 79.0
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-95 354.0 198 86.4
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.2e-85 320.9 298 56.0
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 5.7e-83 312.0 248 67.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 1.5e-78 297.4 215 70.2
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 5.0e-71 272.3 185 76.8
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.7e-69 265.8 193 66.3
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.7e-69 265.8 193 66.3
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.7e-61 239.2 165 67.9
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 2.9e-58 229.9 131 84.0
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 4.1e-57 226.1 140 79.3
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 9.2e-57 224.9 122 84.4
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 6.0e-56 222.2 123 87.0
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 9.2e-49 198.4 164 64.0
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.5e-46 191.0 164 63.4
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 8.1e-45 185.3 164 62.2
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.5e-40 169.9 143 60.1
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 9.6e-30 135.2 118 65.3
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 2.0e-27 127.5 70 90.0
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 7.6e-27 125.6 92 69.6
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.9e-25 120.9 163 42.9
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.3e-23 114.8 90 67.8
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 1.1e-20 105.1 78 65.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 3.2e-17 93.6 69 66.7
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 7.1e-17 92.4 78 59.0
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.1e-17 92.4 118 44.9
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.1e-12 78.6 145 39.3
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 9.3e-09 65.5 42 81.0
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 4.6e-08 63.2 36 75.0
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 1.5e-06 58.2 51 58.8


User provided reference genes

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