Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_00166 Corchorus olitorius HOM05D001887 ORTHO05D003756 3.8e-78 294.7 139 100.0
COL.COLO4_06684 Corchorus olitorius HOM05D001887 ORTHO05D003756 2.8e-73 278.5 130 99.2
Thecc.03G239200 Theobroma cacao HOM05D001887 ORTHO05D003756 2.7e-63 245.4 130 87.7
Duzib084G0537 Durio zibethinus HOM05D001887 ORTHO05D003756 5.5e-61 237.7 130 85.4
Gohir.A09G197200 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.6e-60 236.1 130 84.6
Gorai.006G214600 Gossypium raimondii HOM05D001887 ORTHO05D003756 1.5e-58 229.6 130 81.5
Gohir.A08G162600 Gossypium hirsutum HOM05D001887 ORTHO05D003756 2.6e-58 228.8 130 82.3
Gohir.D09G191800 Gossypium hirsutum HOM05D001887 ORTHO05D003756 4.4e-58 228.0 130 80.8
Gohir.D08G182600 Gossypium hirsutum HOM05D001887 ORTHO05D003756 7.5e-58 227.3 130 81.5
Gorai.004G191600 Gossypium raimondii HOM05D001887 ORTHO05D003756 7.5e-58 227.3 130 81.5
Duzib205G1673 Durio zibethinus HOM05D001887 ORTHO05D003756 1.7e-57 226.1 130 82.3
Hma1.2p1_0840F.1_g226690 Hydrangea macrophylla HOM05D001887 ORTHO05D003756 7.0e-48 194.1 132 64.4
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.7e-47 192.2 130 64.6
Potri.003G083900 Populus trichocarpa HOM05D001887 ORTHO05D003756 1.3e-46 189.9 130 66.2
Cpa.g.sc98.61 Carica papaya HOM05D001887 ORTHO05D003756 2.3e-46 189.1 133 64.7
Dinv25139 Davidia involucrata HOM05D001887 ORTHO05D003756 1.1e-45 186.8 131 64.1
Eucgr.E00348 Eucalyptus grandis HOM05D001887 ORTHO05D003756 1.9e-45 186.0 135 60.7
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 2.5e-45 185.7 130 62.3
Manes.01G089800 Manihot esculenta HOM05D001887 ORTHO05D003756 2.5e-45 185.7 130 63.8
CSS0038249 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D003756 2.1e-44 182.6 130 66.2
Lj8A278T25 Lonicera japonica HOM05D001887 ORTHO05D003756 2.8e-44 182.2 133 62.4
QL12p008613 Quercus lobata HOM05D001887 ORTHO05D003756 3.6e-44 181.8 130 63.1
Oeu017206.1 Olea europaea HOM05D001887 ORTHO05D003756 8.0e-44 180.6 136 61.0
Potri.001G150300 Populus trichocarpa HOM05D001887 ORTHO05D003756 8.0e-44 180.6 130 63.1
vmacro00746 Vaccinium macrocarpon HOM05D001887 ORTHO05D003756 1.4e-43 179.9 134 62.7
Oeu040671.1 Olea europaea HOM05D001887 ORTHO05D003756 1.8e-43 179.5 143 59.4
Prupe.5G054800 Prunus persica HOM05D001887 ORTHO05D003756 2.3e-43 179.1 132 62.1
TWI15G0766 Tripterygium wilfordii HOM05D001887 ORTHO05D003756 3.1e-43 178.7 135 61.5
TAR636G2628 Trochodendron aralioides HOM05D001887 ORTHO05D003756 3.1e-43 178.7 133 60.9
Actinidia02199 Actinidia chinensis HOM05D001887 ORTHO05D003756 4.0e-43 178.3 130 62.3
Aqoxy7G00854 Aquilegia oxysepala HOM05D001887 ORTHO05D003756 4.0e-43 178.3 141 60.3
Rhsim11G0061800 Rhododendron simsii HOM05D001887 ORTHO05D003756 6.8e-43 177.6 134 64.2
Rhsim11G0063300 Rhododendron simsii HOM05D001887 ORTHO05D003756 6.8e-43 177.6 134 64.2
Sabra01G0120100 Salix brachista HOM05D001887 ORTHO05D003756 8.9e-43 177.2 130 62.3
Actinidia25913 Actinidia chinensis HOM05D001887 ORTHO05D003756 2.0e-42 176.0 130 63.1
THA.LOC104812738 Tarenaya hassleriana HOM05D001887 ORTHO05D003756 2.0e-42 176.0 133 60.9
MD06G1046500 Malus domestica HOM05D001887 ORTHO05D003756 2.6e-42 175.6 137 61.3
CsaV3_3G002250 Cucumis sativus L. HOM05D001887 ORTHO05D003756 4.4e-42 174.9 132 62.9
Sed0019172 Sechium edule HOM05D001887 ORTHO05D003756 5.8e-42 174.5 132 62.1
Aa31LG2G13180 Aethionema arabicum HOM05D001887 ORTHO05D003756 7.5e-42 174.1 136 61.8
BcaB04g18387 Brassica carinata HOM05D001887 ORTHO05D003756 1.3e-41 173.3 130 60.0
Carub.0007s2433 Capsella rubella HOM05D001887 ORTHO05D003756 1.3e-41 173.3 133 60.2
Nn1g00743 Nelumbo nucifera HOM05D001887 ORTHO05D003756 1.3e-41 173.3 136 56.6
FAN08G2877 Fragaria x ananassa HOM05D001887 ORTHO05D003756 1.7e-41 172.9 130 62.3
CiPaw.12G056000 Carya illinoinensis HOM05D001887 ORTHO05D003756 2.2e-41 172.6 130 60.0
AL7G37640 Arabidopsis lyrata HOM05D001887 ORTHO05D003756 2.9e-41 172.2 131 60.3
FvH4_5g20480 Fragaria vesca HOM05D001887 ORTHO05D003756 2.9e-41 172.2 130 62.3
FAN13G0539 Fragaria x ananassa HOM05D001887 ORTHO05D003756 2.9e-41 172.2 130 61.5
MELO3C013896.2 Cucumis melo HOM05D001887 ORTHO05D003756 3.7e-41 171.8 132 62.1
Sp7g17110 Schrenkiella parvula HOM05D001887 ORTHO05D003756 3.7e-41 171.8 131 60.3
AT4G17070 Arabidopsis thaliana HOM05D001887 ORTHO05D003756 6.4e-41 171.0 132 59.8
Nitab4.5_0004227g0020 Nicotiana tabacum HOM05D001887 ORTHO05D003756 1.1e-40 170.2 130 56.9
ClCG10G002160 Citrullus lanatus HOM05D001887 ORTHO05D003756 1.4e-40 169.9 132 60.6
Peaxi162Scf00301g00621 Petunia axillaris HOM05D001887 ORTHO05D003756 1.4e-40 169.9 130 56.2
Nitab4.5_0003335g0040 Nicotiana tabacum HOM05D001887 ORTHO05D003756 1.9e-40 169.5 130 56.9
Atru.chr9.1199 Acer truncatum HOM05D001887 ORTHO05D003756 3.2e-40 168.7 130 58.5
BcaC07g38035 Brassica carinata HOM05D001887 ORTHO05D003756 3.2e-40 168.7 133 58.6
BolC8t48429H Brassica oleracea HOM05D001887 ORTHO05D003756 3.2e-40 168.7 133 58.6
Thhalv10025645m.g Eutrema salsugineum HOM05D001887 ORTHO05D003756 4.1e-40 168.3 134 57.5
FAN18G2460 Fragaria x ananassa HOM05D001887 ORTHO05D003756 4.1e-40 168.3 132 62.1
Lj2g0000600 Lotus japonicus HOM05D001887 ORTHO05D003756 4.1e-40 168.3 131 61.8
PSO063G1476 Papaver somniferum HOM05D001887 ORTHO05D003756 5.4e-40 167.9 131 60.3
Lsat_1_v5_gn_3_15401 Lactuca sativa HOM05D001887 ORTHO05D003756 7.0e-40 167.5 130 56.9
RcHm_v2.0_Chr7g0205801 Rosa chinensis HOM05D001887 ORTHO05D003756 7.0e-40 167.5 130 57.7
Nn6g33751 Nelumbo nucifera HOM05D001887 ORTHO05D003756 9.2e-40 167.2 136 55.1
Solyc08g077790.3 Solanum lycopersicum HOM05D001887 ORTHO05D003756 1.2e-39 166.8 132 56.1
arahy.Tifrunner.gnm1.ann1.1W2FB9 Arachis hypogaea HOM05D001887 ORTHO05D003756 2.0e-39 166.0 130 58.5
arahy.Tifrunner.gnm1.ann1.XA2ZF2 Arachis hypogaea HOM05D001887 ORTHO05D003756 2.0e-39 166.0 130 58.5
CANSAT21G1847 Cannabis sativa HOM05D001887 ORTHO05D003756 2.0e-39 166.0 131 58.0
HanXRQChr17g0535581 Helianthus annuus HOM05D001887 ORTHO05D003756 6.0e-39 164.5 134 56.7
SGA_v2.0_scaffold13G06381 Striga asiatica HOM05D001887 ORTHO05D003756 1.7e-38 162.9 131 58.0
HanXRQChr01g0015991 Helianthus annuus HOM05D001887 ORTHO05D003756 3.0e-38 162.2 130 56.9
CAN.G572.15 Capsicum annuum HOM05D001887 ORTHO05D003756 3.9e-38 161.8 130 54.6
A08p12850 Brassica napus HOM05D001887 ORTHO05D003756 5.0e-38 161.4 136 57.4
BraA08t33269Z Brassica rapa HOM05D001887 ORTHO05D003756 5.0e-38 161.4 136 57.4
CiPaw.14G018400 Carya illinoinensis HOM05D001887 ORTHO05D003756 6.6e-38 161.0 134 61.2
SHI07802 Sapria himalayana HOM05D001887 ORTHO05D003756 1.1e-37 160.2 130 58.5
Migut.F01957 Erythranthe guttata HOM05D001887 ORTHO05D003756 3.3e-37 158.7 137 55.5
PGR042G3895 Punica granatum HOM05D001887 ORTHO05D003756 3.3e-37 158.7 132 56.1
PGSC0003DMG400026213 Solanum tuberosum HOM05D001887 ORTHO05D003756 3.3e-37 158.7 132 52.3
Sopen08g026300 Solanum pennellii HOM05D001887 ORTHO05D003756 4.3e-37 158.3 132 53.0
Lj1g0018104 Lotus japonicus HOM05D001887 ORTHO05D003756 1.6e-36 156.4 134 50.7
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 2.8e-36 155.6 131 55.0
RcHm_v2.0_Chr1g0345271 Rosa chinensis HOM05D001887 ORTHO05D003756 2.8e-36 155.6 134 53.0
Ah.12g053960 Amaranthus hybridus HOM05D001887 ORTHO05D003756 3.6e-36 155.2 135 51.9
BolC1t02490H Brassica oleracea HOM05D001887 ORTHO05D003756 4.7e-36 154.8 131 55.0
SalBow4G3207 Salvia bowleyana HOM05D001887 ORTHO05D003756 4.7e-36 154.8 132 54.5
GSVIVG01018309001 Vitis vinifera HOM05D001887 ORTHO05D003756 8.1e-36 154.1 132 56.1
PGR031G0104 Punica granatum HOM05D001887 ORTHO05D003756 1.1e-35 153.7 141 51.1
Sc01g0007950 Simmondsia chinensis HOM05D001887 ORTHO05D003756 1.4e-35 153.3 132 53.8
COL.COLO4_12375 Corchorus olitorius HOM05D001887 ORTHO05D003756 1.8e-35 152.9 130 56.9
Oeu062966.1 Olea europaea HOM05D001887 ORTHO05D003756 2.3e-35 152.5 131 52.7
Hund11502 Selenicereus undatus HOM05D001887 ORTHO05D003756 2.3e-35 152.5 136 52.2
Glyma.11G038700 Glycine max HOM05D001887 ORTHO05D003756 3.1e-35 152.1 130 56.9
Thecc.01G400200 Theobroma cacao HOM05D001887 ORTHO05D003756 3.1e-35 152.1 130 54.6
BcaNung00127 Brassica carinata HOM05D001887 ORTHO05D003756 4.0e-35 151.8 130 54.6
Dinv43603 Davidia involucrata HOM05D001887 ORTHO05D003756 5.2e-35 151.4 134 54.5
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 6.8e-35 151.0 131 54.2
Glyma.18G248100 Glycine max HOM05D001887 ORTHO05D003756 8.9e-35 150.6 130 52.3
TPR.G31434 Trifolium pratense HOM05D001887 ORTHO05D003756 8.9e-35 150.6 132 54.5
Hund14476 Selenicereus undatus HOM05D001887 ORTHO05D003756 1.2e-34 150.2 131 51.9
MSTRG.27485 Avicennia marina HOM05D001887 ORTHO05D003756 2.0e-34 149.4 139 52.5
CANSAT25G0255 Cannabis sativa HOM05D001887 ORTHO05D003756 2.6e-34 149.1 134 54.5
ECA246G3991 Erigeron canadensis HOM05D001887 ORTHO05D003756 2.6e-34 149.1 109 61.5
FvH4_7g09211 Fragaria vesca HOM05D001887 ORTHO05D003756 2.6e-34 149.1 130 50.0
Gorai.007G085200 Gossypium raimondii HOM05D001887 ORTHO05D003756 2.6e-34 149.1 138 54.3
Hma1.2p1_3159F.1_g333390 Hydrangea macrophylla HOM05D001887 ORTHO05D003756 2.6e-34 149.1 79 73.4
Medtr5g013540 Medicago truncatula HOM05D001887 ORTHO05D003756 2.6e-34 149.1 132 55.3
Glyma.01G204300 Glycine max HOM05D001887 ORTHO05D003756 3.4e-34 148.7 130 55.4
QL04p028582 Quercus lobata HOM05D001887 ORTHO05D003756 3.4e-34 148.7 132 52.3
FAN03G2304 Fragaria x ananassa HOM05D001887 ORTHO05D003756 4.4e-34 148.3 130 50.0
Lalb_Chr01g0021681 Lupinus albus HOM05D001887 ORTHO05D003756 5.8e-34 147.9 134 48.5
Duzib138G1052 Durio zibethinus HOM05D001887 ORTHO05D003756 7.5e-34 147.5 131 54.2
VMungo1383G1774 Vigna mungo HOM05D001887 ORTHO05D003756 7.5e-34 147.5 130 53.1
Manes.01G273400 Manihot esculenta HOM05D001887 ORTHO05D003756 9.8e-34 147.1 130 51.5
Prupe.2G121100 Prunus persica HOM05D001887 ORTHO05D003756 9.8e-34 147.1 134 54.5
VMungo1215G1416 Vigna mungo HOM05D001887 ORTHO05D003756 1.3e-33 146.7 130 55.4
Lalb_Chr05g0214201 Lupinus albus HOM05D001887 ORTHO05D003756 1.7e-33 146.4 130 54.6
Phvul.002G002100 Phaseolus vulgaris HOM05D001887 ORTHO05D003756 1.7e-33 146.4 130 55.4
Phvul.008G049200 Phaseolus vulgaris HOM05D001887 ORTHO05D003756 1.7e-33 146.4 130 50.8
ATR0665G190 Amborella trichopoda HOM05D001887 ORTHO05D003756 2.2e-33 146.0 131 54.2
MD07G1097200 Malus domestica HOM05D001887 ORTHO05D003756 2.2e-33 146.0 130 52.3
Glyma.09G245200 Glycine max HOM05D001887 ORTHO05D003756 2.9e-33 145.6 130 50.8
AUR62007172 Chenopodium quinoa HOM05D001887 ORTHO05D003756 4.9e-33 144.8 135 48.9
MBI04_g38562_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D003756 8.3e-33 144.1 142 50.7
Gohir.A11G074800 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.4e-32 143.3 131 53.4
Ah.07g199270 Amaranthus hybridus HOM05D001887 ORTHO05D003756 1.9e-32 142.9 132 47.7
Lalb_Chr19g0126401 Lupinus albus HOM05D001887 ORTHO05D003756 2.4e-32 142.5 131 50.4
Ca_24615_v3 Cicer arietinum L. HOM05D001887 ORTHO05D003756 5.4e-32 141.4 131 51.1
MD07G1096900 Malus domestica HOM05D001887 ORTHO05D003756 5.4e-32 141.4 128 51.6
Potri.014G051300 Populus trichocarpa HOM05D001887 ORTHO05D003756 5.4e-32 141.4 130 50.8
Sabra02G0108700 Salix brachista HOM05D001887 ORTHO05D003756 7.1e-32 141.0 132 53.8
Lalb_Chr09g0324121 Lupinus albus HOM05D001887 ORTHO05D003756 1.2e-31 140.2 130 50.8
arahy.Tifrunner.gnm1.ann1.RES91D Arachis hypogaea HOM05D001887 ORTHO05D003756 4.6e-31 138.3 138 47.1
AUR62018832 Chenopodium quinoa HOM05D001887 ORTHO05D003756 2.3e-30 136.0 135 46.7
arahy.Tifrunner.gnm1.ann1.5JK48S Arachis hypogaea HOM05D001887 ORTHO05D003756 3.0e-30 135.6 138 47.1
arahy.Tifrunner.gnm1.ann1.4V75MI Arachis hypogaea HOM05D001887 ORTHO05D003756 6.6e-30 134.4 139 45.3
Psat2g175640 Pisum sativum HOM05D001887 ORTHO05D003756 6.6e-30 134.4 115 54.8
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 8.6e-30 134.0 87 67.8
ClCG05G003040 Citrullus lanatus HOM05D001887 ORTHO05D003756 1.9e-29 132.9 132 47.7
unitig_46.g18602 Utricularia gibba HOM05D001887 ORTHO05D003756 1.9e-29 132.9 136 44.1
Ciclev10023925m.g Citrus clementina HOM05D001887 ORTHO05D003756 3.3e-29 132.1 133 50.4
CsaV3_3G010660 Cucumis sativus L. HOM05D001887 ORTHO05D003756 4.3e-29 131.7 130 48.5
CDE12G0256 Ceratophyllum demersum HOM05D001887 ORTHO05D003756 1.2e-28 130.2 98 56.1
Potri.002G139600 Populus trichocarpa HOM05D001887 ORTHO05D003756 1.6e-28 129.8 108 56.5
MSTRG.9151 Avicennia marina HOM05D001887 ORTHO05D003756 2.8e-28 129.0 140 48.6
Sed0021992 Sechium edule HOM05D001887 ORTHO05D003756 2.8e-28 129.0 130 45.4
TWI59G0877 Tripterygium wilfordii HOM05D001887 ORTHO05D003756 6.2e-28 127.9 79 69.6
Medtr7g081200 Medicago truncatula HOM05D001887 ORTHO05D003756 8.1e-28 127.5 131 43.5
Psat3g099640 Pisum sativum HOM05D001887 ORTHO05D003756 8.1e-28 127.5 140 40.7
TPR.G25980 Trifolium pratense HOM05D001887 ORTHO05D003756 1.1e-27 127.1 133 44.4
Sed0012793 Sechium edule HOM05D001887 ORTHO05D003756 1.8e-27 126.3 132 50.8
Glyma.17G148700 Glycine max HOM05D001887 ORTHO05D003756 1.5e-26 123.2 134 50.7
MELO3C006285.2 Cucumis melo HOM05D001887 ORTHO05D003756 3.4e-26 122.1 137 44.5
Ca_08045_v3 Cicer arietinum L. HOM05D001887 ORTHO05D003756 5.4e-24 114.8 122 45.9
Os03g0100300 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D003756 3.0e-22 109.0 128 43.0
SEGI_20203 Sequoiadendron giganteum HOM05D001887 ORTHO05D003756 4.3e-21 105.1 113 43.4
Mapoly0034s0116 Marchantia polymorpha HOM05D001887 ORTHO05D003756 9.6e-21 104.0 130 40.0
Gohir.D11G079500 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.8e-19 99.8 50 76.0
DCAR_029503 Daucus carota HOM05D001887 ORTHO05D003756 2.6e-18 95.9 57 61.4
SMO141G0008 Selaginella moellendorffii HOM05D001887 ORTHO05D003756 4.2e-16 88.6 116 38.8
Zm00001eb404550 Zea mays HOM05D001887 ORTHO05D003756 1.2e-15 87.0 61 55.7
Sabra14G0038500 Salix brachista HOM05D001887 ORTHO05D003756 7.8e-15 84.3 112 43.8
GSVIVG01003790001 Vitis vinifera HOM05D001887 ORTHO05D003756 1.3e-14 83.6 55 63.6
RcHm_v2.0_Chr4g0410431 Rosa chinensis HOM05D001887 ORTHO05D003756 1.1e-13 80.5 46 67.4
Pp3c15_10740 Physcomitrium patens HOM05D001887 ORTHO05D003756 5.6e-13 78.2 115 38.3
Pp3c9_3160 Physcomitrium patens HOM05D001887 ORTHO05D003756 2.1e-12 76.3 126 36.5
CDE04G2668 Ceratophyllum demersum HOM05D001887 ORTHO05D003756 4.8e-12 75.1 70 45.7
CBR_g470 Chara braunii HOM05D001887 ORTHO05D003756 4.8e-12 75.1 71 40.8
BcaB04g18384 Brassica carinata HOM05D001887 ORTHO05D003756 5.3e-11 71.6 29 93.1
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 2.0e-10 69.7 29 89.7
Cc08_g11220 Coffea canephora HOM05D001887 ORTHO05D003756 4.4e-10 68.6 29 86.2
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 4.4e-10 68.6 29 86.2
GSVIVG01004825001 Vitis vinifera HOM05D001887 ORTHO05D003756 4.4e-10 68.6 29 86.2
HPP92_025711 Vanilla planifolia HOM05D063056 ORTHO05D051550 9.3e-08 60.8 93 37.6
Lj9A553T47 Lonicera japonica HOM05D001887 ORTHO05D003756 1.2e-07 60.5 29 75.9
Cre06.g307800 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D003756 1.6e-07 60.1 65 43.1
Cre13.g603950 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D003756 3.5e-07 58.9 74 33.8
Sabra14G0036400 Salix brachista HOM05D001887 ORTHO05D003756 7.9e-07 57.8 117 36.8
Dinv07465 Davidia involucrata HOM05D001887 ORTHO05D003756 1.3e-06 57.0 29 79.3
Dinv39794 Davidia involucrata HOM05D001887 ORTHO05D003756 1.3e-06 57.0 29 79.3
Dinv40944 Davidia involucrata HOM05D001887 ORTHO05D003756 1.3e-06 57.0 29 79.3
Cre01.g032600 Chlamydomonas reinhardtii HOM05D001570 ORTHO05D001566 1.7e-06 56.6 63 38.1


User provided reference genes

Program Settings