Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_00063 Corchorus olitorius HOM05D002723 ORTHO05D003240 1.7e-62 242.7 140 100.0
Duzib268G0783 Durio zibethinus HOM05D002723 ORTHO05D003240 1.1e-27 127.1 112 73.2
Thecc.04G176500 Theobroma cacao HOM05D002723 ORTHO05D003240 2.2e-25 119.4 112 70.5
Gohir.A02G012300 Gossypium hirsutum HOM05D002723 ORTHO05D003240 2.7e-23 112.5 111 66.7
Duzib175G0008 Durio zibethinus HOM05D002723 ORTHO05D003240 2.5e-21 105.9 112 67.9
Gohir.D02G013100 Gossypium hirsutum HOM05D002723 ORTHO05D003240 7.4e-21 104.4 111 64.9
Gohir.A10G138800 Gossypium hirsutum HOM05D002723 ORTHO05D003240 8.1e-20 100.9 112 60.7
Gorai.005G016600 Gossypium raimondii HOM05D002723 ORTHO05D003240 1.1e-19 100.5 112 64.3
Gohir.D10G128000 Gossypium hirsutum HOM05D002723 ORTHO05D003240 2.4e-19 99.4 111 60.4
Gorai.011G141100 Gossypium raimondii HOM05D002723 ORTHO05D003240 2.4e-19 99.4 111 60.4
Cpa.g.sc13.109 Carica papaya HOM05D002723 ORTHO05D003240 6.5e-17 91.3 117 56.4
TWI56G0015 Tripterygium wilfordii HOM05D002723 ORTHO05D003240 1.0e-14 84.0 107 53.3
CiPaw.11G006500 Carya illinoinensis HOM05D002723 ORTHO05D003240 1.3e-14 83.6 109 53.2
MD06G1028700 Malus domestica HOM05D002723 ORTHO05D003240 3.0e-14 82.4 113 55.8
Ciclev10030907m.g Citrus clementina HOM05D002723 ORTHO05D003240 8.7e-14 80.9 111 53.2
FAN10G3895 Fragaria x ananassa HOM05D002723 ORTHO05D003240 1.5e-13 80.1 103 55.3
Prupe.5G043100 Prunus persica HOM05D002723 ORTHO05D003240 1.5e-13 80.1 109 53.2
Potri.015G097200 Populus trichocarpa HOM05D002723 ORTHO05D003240 2.5e-13 79.3 107 56.1
Sabra15G0117900 Salix brachista HOM05D002723 ORTHO05D003240 2.5e-13 79.3 107 55.1
Glyma.15G072500 Glycine max HOM05D002723 ORTHO05D003240 4.3e-13 78.6 109 51.4
Sabra12G0071700 Salix brachista HOM05D002723 ORTHO05D003240 4.3e-13 78.6 107 54.2
Lalb_Chr20g0121961 Lupinus albus HOM05D002723 ORTHO05D003240 9.6e-13 77.4 106 53.8
PSO017G3090 Papaver somniferum HOM05D002723 ORTHO05D003240 1.6e-12 76.6 111 46.8
Potri.012G098300 Populus trichocarpa HOM05D002723 ORTHO05D003240 3.7e-12 75.5 107 49.5
PSO478G0593 Papaver somniferum HOM05D002723 ORTHO05D003240 4.8e-12 75.1 111 45.9
FAN01G2771 Fragaria x ananassa HOM05D002723 ORTHO05D003240 6.3e-12 74.7 102 51.0
FAN03G1565 Fragaria x ananassa HOM05D002723 ORTHO05D003240 8.2e-12 74.3 102 51.0
Manes.06G120100 Manihot esculenta HOM05D002723 ORTHO05D003240 8.2e-12 74.3 109 50.5
Duzib212G0411 Durio zibethinus HOM05D002723 ORTHO05D003240 1.4e-11 73.6 50 74.0
Prupe.8G001300 Prunus persica HOM05D002723 ORTHO05D003240 1.4e-11 73.6 113 54.0
Aa31LG4G17180 Aethionema arabicum HOM05D002723 ORTHO05D003240 1.8e-11 73.2 113 47.8
EL10Ac5g11406 Beta vulgaris HOM05D002723 ORTHO05D003240 2.4e-11 72.8 113 45.1
Lj1g0017329 Lotus japonicus HOM05D002723 ORTHO05D003240 2.4e-11 72.8 106 51.9
PGR083G1230 Punica granatum HOM05D002723 ORTHO05D003240 2.4e-11 72.8 112 50.9
TAR371G0575 Trochodendron aralioides HOM05D002723 ORTHO05D003240 3.1e-11 72.4 117 53.8
THA.LOC104821520 Tarenaya hassleriana HOM05D002723 ORTHO05D003240 4.1e-11 72.0 111 51.4
TWI12G0787 Tripterygium wilfordii HOM05D002723 ORTHO05D003240 4.1e-11 72.0 111 49.5
BcaB05g23006 Brassica carinata HOM05D002723 ORTHO05D003240 5.3e-11 71.6 110 50.9
Carub.0005s1475 Capsella rubella HOM05D002723 ORTHO05D003240 5.3e-11 71.6 119 50.4
Thhalv10011030m.g Eutrema salsugineum HOM05D002723 ORTHO05D003240 5.3e-11 71.6 112 52.7
AL5G28010 Arabidopsis lyrata HOM05D002723 ORTHO05D003240 6.9e-11 71.2 114 48.2
A01p25340 Brassica napus HOM05D002723 ORTHO05D003240 6.9e-11 71.2 107 51.4
BraA01t02444Z Brassica rapa HOM05D002723 ORTHO05D003240 6.9e-11 71.2 107 51.4
Pp3c10_21800 Physcomitrium patens HOM05D002723 ORTHO05D003240 6.9e-11 71.2 47 70.2
Mapoly0088s0092 Marchantia polymorpha HOM05D002723 ORTHO05D003240 1.2e-10 70.5 47 70.2
C01p32280 Brassica napus HOM05D002723 ORTHO05D003240 1.5e-10 70.1 110 50.0
BolC1t03114H Brassica oleracea HOM05D002723 ORTHO05D003240 1.5e-10 70.1 110 50.0
CANSAT80G2425 Cannabis sativa HOM05D002723 ORTHO05D003240 1.5e-10 70.1 118 45.8
Ca_00309_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 1.5e-10 70.1 109 49.5
Ca_00314_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 1.5e-10 70.1 109 49.5
Pp3c20_22440 Physcomitrium patens HOM05D002723 ORTHO05D003240 1.5e-10 70.1 47 68.1
BcaC09g49880 Brassica carinata HOM05D002723 ORTHO05D003240 2.6e-10 69.3 110 50.0
MD10G1013700 Malus domestica HOM05D002723 ORTHO05D003240 2.6e-10 69.3 106 52.8
Sp5g13420 Schrenkiella parvula HOM05D002723 ORTHO05D003240 2.6e-10 69.3 111 49.5
Sc22g0003800 Simmondsia chinensis HOM05D002723 ORTHO05D003240 2.6e-10 69.3 115 50.4
FvH4_7g06770 Fragaria vesca HOM05D002723 ORTHO05D003240 3.4e-10 68.9 106 53.8
FAN06G1916 Fragaria x ananassa HOM05D002723 ORTHO05D003240 3.4e-10 68.9 106 53.8
Hma1.2p1_0014F.1_g009360 Hydrangea macrophylla HOM05D002723 ORTHO05D003240 3.4e-10 68.9 108 47.2
Lj6g0017314 Lotus japonicus HOM05D002723 ORTHO05D003240 3.4e-10 68.9 109 48.6
RcHm_v2.0_Chr6g0249401 Rosa chinensis HOM05D002723 ORTHO05D003240 4.5e-10 68.6 107 47.7
THA.LOC104818184 Tarenaya hassleriana HOM05D002723 ORTHO05D003240 4.5e-10 68.6 112 47.3
AagrBONN_evm.TU.Sc2ySwM_344.1740 Anthoceros agrestis HOM05D002723 ORTHO05D003240 5.9e-10 68.2 44 72.7
Ca_16049_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 5.9e-10 68.2 111 50.5
Thhalv10010177m.g Eutrema salsugineum HOM05D002723 ORTHO05D003240 5.9e-10 68.2 113 52.2
AUR62029606 Chenopodium quinoa HOM05D002723 ORTHO05D003240 7.6e-10 67.8 112 46.4
Medtr2g013120 Medicago truncatula HOM05D002723 ORTHO05D003240 7.6e-10 67.8 110 46.4
Solyc07g061940.4 Solanum lycopersicum HOM05D002723 ORTHO05D003240 7.6e-10 67.8 113 45.1
Sopen07g030210 Solanum pennellii HOM05D002723 ORTHO05D003240 7.6e-10 67.8 113 45.1
Cfa018790 Carpinus fangiana HOM05D002723 ORTHO05D003240 1.0e-09 67.4 103 50.5
CBR_g42125 Chara braunii HOM05D002723 ORTHO05D003240 1.0e-09 67.4 47 66.0
PGSC0003DMG400007078 Solanum tuberosum HOM05D002723 ORTHO05D003240 1.0e-09 67.4 109 45.9
Eucgr.B00108 Eucalyptus grandis HOM05D002723 ORTHO05D003240 1.3e-09 67.0 115 47.0
QL10p002814 Quercus lobata HOM05D002723 ORTHO05D003240 1.3e-09 67.0 122 45.9
QL10p002843 Quercus lobata HOM05D002723 ORTHO05D003240 1.3e-09 67.0 125 44.0
CARHR157360 Cardamine hirsuta HOM05D002723 ORTHO05D003240 1.7e-09 66.6 122 45.9
CBR_g18887 Chara braunii HOM05D002723 ORTHO05D003240 1.7e-09 66.6 104 46.2
Gohir.D02G013000 Gossypium hirsutum HOM05D002723 ORTHO05D003240 1.7e-09 66.6 50 68.0
Gorai.005G016500 Gossypium raimondii HOM05D002723 ORTHO05D003240 1.7e-09 66.6 50 68.0
Sed0003955 Sechium edule HOM05D002723 ORTHO05D003240 1.7e-09 66.6 110 51.8
TAR629G0881 Trochodendron aralioides HOM05D002723 ORTHO05D003240 1.7e-09 66.6 113 54.0
AUR62034831 Chenopodium quinoa HOM05D002723 ORTHO05D003240 2.2e-09 66.2 115 44.3
CBR_g8138 Chara braunii HOM05D002723 ORTHO05D003240 2.9e-09 65.9 47 63.8
HanXRQChr09g0273191 Helianthus annuus HOM05D002723 ORTHO05D003240 2.9e-09 65.9 97 51.5
Lsat_1_v5_gn_4_80820 Lactuca sativa HOM05D002723 ORTHO05D003240 2.9e-09 65.9 110 42.7
Nitab4.5_0011199g0020 Nicotiana tabacum HOM05D002723 ORTHO05D003240 2.9e-09 65.9 34 82.4
arahy.Tifrunner.gnm1.ann1.881M8L Arachis hypogaea HOM05D002723 ORTHO05D003240 3.8e-09 65.5 83 49.4
arahy.Tifrunner.gnm1.ann1.KGMC0X Arachis hypogaea HOM05D002723 ORTHO05D003240 3.8e-09 65.5 92 46.7
Glyma.04G196100 Glycine max HOM05D002723 ORTHO05D003240 3.8e-09 65.5 108 47.2
Glyma.06G169700 Glycine max HOM05D002723 ORTHO05D003240 3.8e-09 65.5 104 44.2
Nn5g28176 Nelumbo nucifera HOM05D002723 ORTHO05D003240 3.8e-09 65.5 120 43.3
Psat1g205600 Pisum sativum HOM05D002723 ORTHO05D003240 3.8e-09 65.5 112 49.1
Solyc06g059880.3 Solanum lycopersicum HOM05D002723 ORTHO05D003240 3.8e-09 65.5 87 50.6
Actinidia36724 Actinidia chinensis HOM05D002723 ORTHO05D003240 6.5e-09 64.7 34 79.4
AT3G48560 Arabidopsis thaliana HOM05D002723 ORTHO05D003240 6.5e-09 64.7 86 47.7
CAN.G46.9 Capsicum annuum HOM05D002723 ORTHO05D003240 6.5e-09 64.7 34 79.4
CBR_g8110 Chara braunii HOM05D002723 ORTHO05D003240 6.5e-09 64.7 40 75.0
CBR_g8113 Chara braunii HOM05D002723 ORTHO05D003240 6.5e-09 64.7 40 75.0
Ciclev10007130m.g Citrus clementina HOM05D002723 ORTHO05D003240 6.5e-09 64.7 76 48.7
vmacro23016 Vaccinium macrocarpon HOM05D002723 ORTHO05D003240 6.5e-09 64.7 38 73.7
VMungo0540G1422 Vigna mungo HOM05D002723 ORTHO05D003240 8.5e-09 64.3 94 45.7
Cfa010011 Carpinus fangiana HOM05D002723 ORTHO05D003240 1.1e-08 63.9 34 79.4
Nn1g08711 Nelumbo nucifera HOM05D002723 ORTHO05D003240 1.1e-08 63.9 108 42.6
Nitab4.5_0001530g0160 Nicotiana tabacum HOM05D002723 ORTHO05D003240 1.1e-08 63.9 103 43.7
RcHm_v2.0_Chr7g0208791 Rosa chinensis HOM05D002723 ORTHO05D003240 1.1e-08 63.9 111 44.1
SGA_v2.0_scaffold215G42341 Striga asiatica HOM05D002723 ORTHO05D003240 1.1e-08 63.9 99 48.5
Dinv23153 Davidia involucrata HOM05D002723 ORTHO05D003240 1.4e-08 63.5 34 79.4
Gohir.A02G012201 Gossypium hirsutum HOM05D002723 ORTHO05D003240 1.4e-08 63.5 42 71.4
Phvul.006G187400 Phaseolus vulgaris HOM05D002723 ORTHO05D003240 1.4e-08 63.5 105 46.7
Phvul.009G166100 Phaseolus vulgaris HOM05D002723 ORTHO05D003240 1.4e-08 63.5 104 43.3
ClCG06G017910 Citrullus lanatus HOM05D002723 ORTHO05D003240 1.9e-08 63.2 118 47.5
Lj9P479T33 Lonicera japonica HOM05D002723 ORTHO05D003240 1.9e-08 63.2 104 47.1
Sed0017429 Sechium edule HOM05D002723 ORTHO05D003240 1.9e-08 63.2 112 45.5
PGSC0003DMG400034102 Solanum tuberosum HOM05D002723 ORTHO05D003240 1.9e-08 63.2 112 42.0
Rhsim08G0190500 Rhododendron simsii HOM05D002723 ORTHO05D003240 2.5e-08 62.8 111 48.6
VMungo1309G1476 Vigna mungo HOM05D002723 ORTHO05D003240 2.5e-08 62.8 108 45.4
MSTRG.11276 Avicennia marina HOM05D002723 ORTHO05D003240 3.2e-08 62.4 108 42.6
Peaxi162Scf00377g00074 Petunia axillaris HOM05D002723 ORTHO05D003240 3.2e-08 62.4 96 42.7
SGA_v2.0_scaffold649G53352 Striga asiatica HOM05D002723 ORTHO05D003240 3.2e-08 62.4 101 40.6
CBR_g8112 Chara braunii HOM05D002723 ORTHO05D003240 4.2e-08 62.0 40 72.5
Dinv11176 Davidia involucrata HOM05D002723 ORTHO05D003240 4.2e-08 62.0 106 46.2
Solyc03g044330.1 Solanum lycopersicum HOM05D002723 ORTHO05D003240 4.2e-08 62.0 112 42.0
CSS0024943 Camellia sinensis var. sinensis HOM05D002723 ORTHO05D003240 5.5e-08 61.6 95 46.3
MELO3C026205.2 Cucumis melo HOM05D002723 ORTHO05D003240 5.5e-08 61.6 114 45.6
Sopen03g008440 Solanum pennellii HOM05D002723 ORTHO05D003240 5.5e-08 61.6 112 42.0
Ah.11g045440 Amaranthus hybridus HOM05D002723 ORTHO05D003240 7.2e-08 61.2 106 47.2
ATR0561G089 Amborella trichopoda HOM05D002723 ORTHO05D003240 7.2e-08 61.2 107 44.9
CSS0023817 Camellia sinensis var. sinensis HOM05D002723 ORTHO05D003240 7.2e-08 61.2 95 46.3
CsaV3_1G000560 Cucumis sativus L. HOM05D002723 ORTHO05D003240 7.2e-08 61.2 112 43.8
Eucgr.K02720 Eucalyptus grandis HOM05D002723 ORTHO05D003240 7.2e-08 61.2 113 45.1
Nn5g28177 Nelumbo nucifera HOM05D002723 ORTHO05D003240 7.2e-08 61.2 40 70.0
Nitab4.5_0010961g0010 Nicotiana tabacum HOM05D002723 ORTHO05D003240 7.2e-08 61.2 80 47.5
Haze_07132 Corylus avellana HOM05D002723 ORTHO05D003240 9.3e-08 60.8 98 44.9
Haze_07133 Corylus avellana HOM05D002723 ORTHO05D003240 9.3e-08 60.8 98 44.9
Aqoxy3G00597 Aquilegia oxysepala HOM05D002723 ORTHO05D003240 1.2e-07 60.5 116 44.0
MBI16_g26408_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 1.2e-07 60.5 101 43.6
PRCOL_00003526 Prasinoderma coloniale HOM05D002723 ORTHO05D003240 1.2e-07 60.5 47 63.8
MBI16_g31470_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 1.6e-07 60.1 131 39.7
TWI32G0594 Tripterygium wilfordii HOM05D002723 ORTHO05D003240 1.6e-07 60.1 49 63.3
DCAR_007493 Daucus carota HOM05D002723 ORTHO05D003240 2.1e-07 59.7 106 41.5
HanXRQChr02g0034691 Helianthus annuus HOM05D002723 ORTHO05D003240 2.1e-07 59.7 33 75.8
Peaxi162Scf00591g00413 Petunia axillaris HOM05D002723 ORTHO05D003240 2.7e-07 59.3 108 44.4
Sopen06g019960 Solanum pennellii HOM05D002723 ORTHO05D003240 2.7e-07 59.3 92 45.7
Aqoxy5G00561 Aquilegia oxysepala HOM05D002723 ORTHO05D003240 3.6e-07 58.9 111 43.2
SMO298G0030 Selaginella moellendorffii HOM05D002723 ORTHO05D003240 3.6e-07 58.9 40 72.5
MCO08G154 Micromonas commoda HOM05D002723 ORTHO05D003240 6.1e-07 58.2 35 77.1
Oeu005003.1 Olea europaea HOM05D002723 ORTHO05D003240 6.1e-07 58.2 112 42.0
Dinv02539 Davidia involucrata HOM05D002723 ORTHO05D003240 7.9e-07 57.8 84 46.4
Psat5g051480 Pisum sativum HOM05D002723 ORTHO05D003240 7.9e-07 57.8 99 44.4
SMO118G0217 Selaginella moellendorffii HOM05D002723 ORTHO05D003240 7.9e-07 57.8 35 77.1
unitig_26.g9287 Utricularia gibba HOM05D002723 ORTHO05D003240 7.9e-07 57.8 111 42.3
Medtr3g099190 Medicago truncatula HOM05D002723 ORTHO05D003240 1.0e-06 57.4 104 41.3
Migut.D01268 Erythranthe guttata HOM05D002723 ORTHO05D003240 1.3e-06 57.0 109 40.4
Oeu018541.1 Olea europaea HOM05D002723 ORTHO05D003240 1.3e-06 57.0 111 44.1
SEGI_17803 Sequoiadendron giganteum HOM05D002723 ORTHO05D003240 1.8e-06 56.6 70 42.9
Zm00001eb180890 Zea mays HOM05D002723 ORTHO05D003240 1.8e-06 56.6 44 65.9
Migut.I00533 Erythranthe guttata HOM05D002723 ORTHO05D003240 2.3e-06 56.2 108 39.8
DCAR_021621 Daucus carota HOM05D002723 ORTHO05D003240 3.0e-06 55.8 111 45.0
Actinidia25568 Actinidia chinensis HOM05D002723 ORTHO05D003240 6.7e-06 54.7 112 37.5
C08p23620 Brassica napus HOM05D002723 ORTHO05D028085 8.7e-06 54.3 117 42.7
BolC8t49991H Brassica oleracea HOM05D002723 ORTHO05D028085 8.7e-06 54.3 117 42.7
PGSC0003DMG400013027 Solanum tuberosum HOM05D002723 ORTHO05D003240 8.7e-06 54.3 110 40.9


User provided reference genes

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