Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.5e-68 262.7 132 100.0
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.9e-47 192.6 128 81.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.7e-46 188.3 128 78.9
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 7.6e-36 154.1 132 65.2
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 4.2e-34 148.3 132 63.6
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.8e-32 142.9 130 62.3
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.8e-32 142.9 130 62.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.9e-32 141.7 130 61.5
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 9.4e-26 120.6 132 50.8
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 2.1e-25 119.4 132 51.5
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 2.1e-25 119.4 142 48.6
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 3.0e-24 115.5 127 51.2
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 8.8e-24 114.0 128 50.8
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.1e-23 113.6 132 50.8
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.1e-23 113.6 132 50.8
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.0e-23 112.8 128 49.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 2.6e-23 112.5 132 50.0
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 4.4e-23 111.7 128 50.0
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 9.7e-23 110.5 128 48.4
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 9.7e-23 110.5 128 48.4
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 9.7e-23 110.5 132 47.7
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 1.7e-22 109.8 142 44.4
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 2.8e-22 109.0 132 49.2
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 3.7e-22 108.6 128 49.2
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 6.3e-22 107.8 128 48.4
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 6.3e-22 107.8 130 50.8
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 6.3e-22 107.8 129 49.6
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 6.3e-22 107.8 129 49.6
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 6.3e-22 107.8 128 49.2
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 8.2e-22 107.5 138 48.6
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.1e-21 107.1 127 49.6
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.1e-21 107.1 129 49.6
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.1e-21 107.1 128 49.2
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 2.4e-21 105.9 129 49.6
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 2.4e-21 105.9 130 49.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 3.1e-21 105.5 132 49.2
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 9.1e-21 104.0 128 47.7
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.0e-20 102.8 128 49.2
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 2.6e-20 102.4 127 47.2
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 2.6e-20 102.4 105 53.3
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.4e-20 102.1 125 47.2
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 3.4e-20 102.1 132 48.5
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 5.9e-20 101.3 129 45.7
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 2.9e-19 99.0 136 47.1
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 2.9e-19 99.0 132 46.2
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 3.8e-19 98.6 128 45.3
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.0e-19 98.2 128 45.3
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 5.0e-19 98.2 128 45.3
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 8.5e-19 97.4 132 46.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 1.4e-18 96.7 128 44.5
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.4e-18 96.7 134 44.8
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 5.5e-18 94.7 131 44.3
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 5.5e-18 94.7 132 44.7
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 5.5e-18 94.7 131 44.3
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 7.2e-18 94.4 112 50.9
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 9.4e-18 94.0 134 44.0
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.4e-18 94.0 128 48.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 9.4e-18 94.0 134 45.5
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 1.2e-17 93.6 132 42.4
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.6e-17 93.2 133 44.4
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 1.6e-17 93.2 128 43.8
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.7e-17 92.4 131 43.5
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 3.6e-17 92.0 150 38.7
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 4.7e-17 91.7 132 43.2
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 6.1e-17 91.3 114 49.1
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 6.1e-17 91.3 157 38.2
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 8.0e-17 90.9 132 43.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 1.0e-16 90.5 131 41.2
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.8e-16 89.7 115 46.1
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.0e-15 86.3 132 40.9
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 2.0e-15 86.3 114 44.7
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 9.7e-15 84.0 147 36.1
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.8e-14 82.4 128 40.6
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 1.8e-13 79.7 132 39.4
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 5.3e-13 78.2 128 37.5
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 7.0e-13 77.8 124 41.9
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 5.9e-12 74.7 144 37.5
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 5.9e-12 74.7 132 39.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 1.0e-11 73.9 129 35.7
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 5.0e-11 71.6 109 40.4
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.1e-10 70.5 118 42.4
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 1.1e-10 70.5 114 36.8
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 2.5e-10 69.3 114 36.8
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 9.4e-10 67.4 110 38.2
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 1.2e-09 67.0 135 36.3
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 8.0e-09 64.3 83 44.6
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 1.0e-08 63.9 127 32.3
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.4e-08 63.5 108 38.9
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.4e-08 63.5 152 31.6
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.7e-08 61.2 133 30.8
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.7e-08 61.2 133 30.8
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.5e-07 60.1 87 41.4
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 2.8e-06 55.8 131 30.5


User provided reference genes

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