Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 0.0e+00 2489.1 1254 100.0
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 0.0e+00 1524.6 1364 59.4
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 0.0e+00 1464.5 1352 56.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 0.0e+00 1437.6 1360 56.8
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1424.5 1347 56.1
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1420.6 1361 55.5
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 0.0e+00 1397.1 1350 55.8
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1384.0 1280 57.9
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 0.0e+00 1380.5 1365 54.1
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 1377.5 1353 54.5
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 0.0e+00 1373.2 1339 54.8
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1370.1 1366 54.5
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1366.3 1353 53.9
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1365.5 1353 53.8
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 0.0e+00 1361.7 1299 56.4
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1360.9 1354 55.2
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 0.0e+00 1357.4 1355 53.9
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 0.0e+00 1355.9 1361 53.0
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 0.0e+00 1351.3 1351 53.8
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 0.0e+00 1340.5 1361 52.9
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1338.9 1349 54.0
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 0.0e+00 1337.8 1351 52.7
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1331.6 1412 51.8
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1330.1 1423 52.1
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 0.0e+00 1326.2 1348 52.7
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1321.6 1353 53.6
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 0.0e+00 1320.4 1349 54.0
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 0.0e+00 1317.4 1365 52.2
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1311.6 1345 53.5
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 0.0e+00 1311.2 1355 53.4
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1310.4 1353 52.4
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 1308.9 1364 52.4
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1305.4 1354 54.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 0.0e+00 1305.4 1338 53.1
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 0.0e+00 1299.6 1364 51.4
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 0.0e+00 1298.1 1308 53.4
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 0.0e+00 1298.1 1367 52.4
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 0.0e+00 1294.6 1360 51.0
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 0.0e+00 1291.6 1359 51.5
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1290.4 1338 52.7
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 0.0e+00 1288.5 1349 52.3
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 0.0e+00 1285.0 1420 51.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1284.2 1354 52.1
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 0.0e+00 1279.6 1369 50.8
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 0.0e+00 1271.1 1363 51.0
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 0.0e+00 1270.8 1366 51.8
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 0.0e+00 1269.6 1361 51.5
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 0.0e+00 1266.1 1390 50.7
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 0.0e+00 1264.2 1282 53.7
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 0.0e+00 1263.1 1390 50.1
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 0.0e+00 1262.7 1335 52.3
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 0.0e+00 1258.8 1362 50.3
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 0.0e+00 1256.5 1260 54.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 1253.8 1123 58.3
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1251.5 1341 51.4
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1251.1 1341 51.3
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 0.0e+00 1236.1 1127 57.1
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 0.0e+00 1234.2 1404 50.0
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1219.9 1009 61.3
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 0.0e+00 1215.7 1369 50.3
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 1214.5 1368 51.0
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1212.2 1305 51.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1211.8 1391 48.7
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1209.9 1326 51.1
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 0.0e+00 1208.7 1391 48.7
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1203.0 1386 48.9
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 0.0e+00 1202.2 1125 56.2
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1200.7 1392 48.4
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1194.5 1258 52.1
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1186.8 1392 47.9
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 0.0e+00 1155.2 1213 52.1
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1133.6 1343 48.0
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 0.0e+00 1130.2 958 60.1
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1129.4 1343 47.7
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 0.0e+00 1127.5 1379 47.7
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 0.0e+00 1126.3 1358 48.0
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 0.0e+00 1124.0 1360 48.5
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1117.1 1380 47.3
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 0.0e+00 1116.3 1366 47.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1113.2 1365 48.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1110.1 1365 48.0
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 0.0e+00 1110.1 1365 47.8
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 1109.0 1429 46.0
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 0.0e+00 1108.2 1290 47.7
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 0.0e+00 1104.4 1379 46.6
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 0.0e+00 1096.6 974 58.0
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 5.0e-310 1068.1 1350 45.6
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.0e-302 1043.9 1230 49.5
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 3.5e-295 1018.8 1415 42.5
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 1.5e-293 1013.4 1396 44.0
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 9.8e-282 974.2 854 60.3
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.0e-280 968.0 862 58.4
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 1.3e-278 963.8 929 56.2
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 5.0e-278 961.8 1358 43.9
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.7e-273 946.8 1304 44.4
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.1e-268 929.9 1138 46.1
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 1.0e-262 911.0 1033 50.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 2.8e-260 902.9 738 61.9
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 2.4e-248 863.2 850 54.8
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 1.0e-246 857.8 937 50.6
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 3.8e-241 839.3 1054 46.4
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 5.4e-232 808.9 814 53.6
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.8e-228 796.6 832 53.6
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 3.4e-226 789.6 721 59.2
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 6.0e-223 778.9 1100 41.2
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 5.1e-206 722.6 679 57.3
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 6.9e-203 712.2 1010 42.9
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.3e-196 691.4 1142 38.3
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.8e-187 661.0 650 52.5
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 6.7e-182 642.5 1238 35.6
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.8e-158 562.8 727 44.2
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 2.1e-135 488.0 387 66.7
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 2.6e-109 401.4 252 76.6
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.5e-101 375.6 726 37.3
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 9.6e-96 356.3 706 36.4
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.3e-95 355.9 549 40.1
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 9.3e-91 339.7 223 76.2
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 3.1e-86 324.7 265 65.3
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 3.4e-85 321.2 366 46.2
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 7.2e-83 313.5 461 41.0
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.3e-71 276.2 293 51.2
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 1.1e-67 263.1 253 51.4
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 9.7e-64 250.0 427 38.4
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 4.4e-56 224.6 356 40.2
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 4.8e-55 221.1 394 35.3
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.1e-54 216.9 384 35.2
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 9.1e-54 216.9 353 39.7
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.8e-52 211.5 317 39.4
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 1.2e-48 199.9 391 32.5
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.3e-47 194.1 557 30.7
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 4.5e-45 188.0 316 39.9
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 1.5e-43 183.0 295 37.6
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 4.2e-43 181.4 506 28.9
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 5.5e-43 181.0 602 29.2
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 2.3e-41 175.6 172 52.9
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.0e-41 174.9 453 31.1
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 1.2e-40 173.3 394 34.0
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 7.5e-40 170.6 213 47.9
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 7.5e-40 170.6 213 47.9
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.5e-40 170.6 608 27.3
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 7.0e-38 164.1 244 38.9
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.2e-38 163.7 326 32.5
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.3e-36 159.1 259 38.2
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 2.9e-36 158.7 358 31.3
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.5e-35 156.4 260 38.5
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 2.5e-35 155.6 291 35.4
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 1.6e-34 152.9 94 80.9
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 6.2e-34 151.0 166 47.6
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.0e-33 150.2 263 37.3
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 1.3e-31 143.3 165 46.1
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.7e-31 142.9 259 34.4
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 8.3e-31 140.6 311 33.8
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 4.3e-27 128.3 282 31.9
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 3.1e-25 122.1 80 67.5
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 4.0e-25 121.7 155 43.2
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 1.5e-24 119.8 100 56.0
vmacro22218 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 4.4e-24 118.2 79 68.4
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 2.4e-22 112.5 79 62.0
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 2.7e-21 109.0 167 38.9
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 1.7e-20 106.3 257 30.0
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.3e-20 105.9 164 43.3
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.5e-19 102.4 493 27.0
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 1.2e-18 100.1 160 39.4
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.7e-18 98.2 159 42.1
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.8e-17 96.3 172 34.9
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 1.2e-16 93.6 63 63.5
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.8e-16 91.3 148 33.8
C02p22550 Brassica napus HOM05D002270 ORTHO05D002866 2.4e-14 85.9 112 41.1
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 5.1e-12 78.2 135 40.0
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 1.5e-11 76.6 164 32.3
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 9.6e-11 73.9 100 45.0
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 9.6e-11 73.9 100 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1507 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.6e-10 73.2 147 34.0
SEGI_19104 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.1e-10 72.8 130 30.8
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 3.6e-10 72.0 99 44.4
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 5.8e-08 64.7 73 35.6
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.2e-07 62.8 180 30.0
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 1.9e-06 59.7 110 37.3


User provided reference genes

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