Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.9e-239 830.5 423 100.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.0e-150 537.3 426 66.4
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.7e-142 507.7 445 64.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 3.4e-138 495.7 431 63.1
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.0e-137 491.9 421 63.9
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 4.6e-135 485.3 446 60.3
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.9e-134 482.3 440 59.5
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 8.8e-134 481.1 440 58.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.7e-133 478.4 378 72.5
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.8e-132 475.3 440 58.6
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.4e-131 473.8 440 58.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.8e-131 473.4 440 58.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.3e-131 471.9 440 58.6
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-130 470.7 441 58.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.5e-130 470.3 398 62.3
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.5e-130 470.3 441 57.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 3.4e-130 469.2 441 58.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 7.7e-130 468.0 442 57.5
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 7.7e-130 468.0 400 61.2
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.0e-129 467.6 440 58.2
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.3e-129 467.2 440 57.7
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.3e-129 467.2 441 57.1
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.2e-129 466.5 388 62.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.2e-129 466.5 440 58.0
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.9e-129 466.1 395 65.8
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.0e-129 465.3 439 57.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 5.0e-129 465.3 398 61.1
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.4e-128 463.8 440 58.0
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 7.2e-128 461.5 442 56.8
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.7e-127 459.5 440 58.4
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 4.7e-127 458.8 440 58.4
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.7e-127 458.8 442 55.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.1e-127 458.4 440 58.4
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 6.1e-127 458.4 440 58.0
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.4e-126 457.2 452 56.4
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.8e-126 456.8 445 56.6
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.3e-126 456.4 416 58.4
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 3.9e-126 455.7 441 58.3
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.9e-126 455.7 446 57.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 8.8e-126 454.5 446 55.8
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.0e-125 453.4 418 58.6
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.0e-125 453.4 441 58.0
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.3e-125 452.6 440 58.0
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.3e-125 452.6 438 57.8
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 4.4e-125 452.2 418 58.4
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 4.4e-125 452.2 441 55.6
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.4e-125 452.2 441 55.6
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 7.4e-125 451.4 444 55.6
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 7.4e-125 451.4 436 56.4
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.7e-124 450.3 441 57.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.2e-124 449.9 441 56.5
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.8e-124 448.7 442 57.9
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 4.8e-124 448.7 442 56.8
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.4e-123 447.2 440 55.5
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.8e-123 446.8 424 56.8
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 3.1e-123 446.0 442 57.0
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 4.1e-123 445.7 442 56.6
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 4.1e-123 445.7 400 59.5
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.9e-122 441.8 477 53.0
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.3e-121 440.7 446 56.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 2.2e-121 439.9 442 56.8
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.8e-121 439.1 438 56.2
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.5e-120 436.4 429 55.2
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.2e-120 435.6 439 54.4
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 5.5e-120 435.3 396 56.3
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 5.5e-120 435.3 439 53.8
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 7.2e-120 434.9 434 54.8
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.2e-119 434.1 401 56.6
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.2e-119 434.1 434 54.4
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.6e-119 433.7 435 56.8
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.0e-118 431.0 367 61.3
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.0e-118 431.0 426 55.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.4e-118 430.6 412 57.8
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 5.2e-118 428.7 402 57.5
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.7e-118 428.3 439 54.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 8.8e-118 427.9 443 53.7
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 8.8e-118 427.9 433 54.3
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.1e-117 427.6 390 57.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.0e-117 426.8 446 53.8
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 5.7e-117 425.2 370 61.1
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.7e-117 424.5 443 53.0
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.4e-115 420.6 446 53.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 2.4e-115 419.9 446 53.8
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.4e-115 419.9 439 54.4
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.2e-114 417.5 446 53.6
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 5.9e-114 415.2 426 55.2
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.0e-113 414.5 426 55.4
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.0e-113 414.5 373 59.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.9e-113 412.9 430 53.5
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 5.0e-113 412.1 389 54.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 8.5e-113 411.4 391 56.0
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.9e-112 410.2 438 55.0
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 3.2e-112 409.5 438 53.0
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 7.2e-112 408.3 446 53.6
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 9.4e-112 407.9 448 52.7
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 4.7e-111 405.6 402 54.5
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 6.7e-110 401.7 442 50.2
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.5e-109 400.6 447 50.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.6e-109 399.8 453 52.5
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 9.7e-109 397.9 401 54.9
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.7e-108 397.1 474 49.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.1e-107 392.9 376 54.3
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.1e-107 392.9 376 54.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.1e-107 392.5 353 60.3
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.1e-107 392.5 405 52.8
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 5.0e-105 385.6 440 49.1
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 8.0e-103 378.3 387 53.0
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 6.8e-102 375.2 274 70.8
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.1e-99 366.3 327 57.5
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.8e-97 359.4 331 58.3
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.9e-96 357.1 443 47.6
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 2.5e-96 356.7 267 65.9
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.6e-95 352.8 429 48.0
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.2e-94 349.0 378 52.9
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 8.9e-94 348.2 377 51.5
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 9.8e-93 344.7 434 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 7.0e-91 338.6 350 52.0
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 8.9e-86 321.6 439 44.6
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.7e-84 316.2 449 45.9
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.7e-84 316.2 224 69.2
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.8e-78 297.4 221 67.0
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 7.3e-72 275.4 352 43.8
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 8.1e-71 271.9 287 53.7
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.1e-70 271.6 369 47.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.6e-66 256.1 347 43.8
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 3.6e-63 246.5 174 70.1
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 4.9e-60 236.1 402 37.6
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.4e-59 233.8 176 66.5
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.4e-35 154.8 211 45.5
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.5e-32 144.8 98 71.4
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.5e-32 144.8 487 26.9
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.4e-27 128.3 188 43.1
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 3.9e-25 120.2 111 55.0
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.5e-24 118.2 111 53.2
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.8e-22 111.3 95 55.8
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 4.1e-22 110.2 237 32.1
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 5.9e-21 106.3 95 60.0
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 7.7e-21 105.9 158 43.7
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.3e-20 105.1 208 34.6
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.1e-19 102.1 87 60.9
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 2.1e-18 97.8 160 37.5
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.5e-13 81.6 226 26.5
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 5.5e-11 73.2 117 42.7
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.1e-08 65.5 46 67.4
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.3e-07 62.0 107 39.3
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 2.2e-07 61.2 78 48.7
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.3e-06 56.6 158 33.5


User provided reference genes

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