Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.5e-124 448.0 232 100.0
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.7e-120 434.1 232 96.6
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 9.1e-101 370.5 232 83.6
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.2e-98 362.1 232 81.5
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 1.0e-91 340.5 232 78.4
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 7.3e-90 334.3 225 78.7
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 7.3e-90 334.3 227 78.0
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 2.1e-89 332.8 227 77.1
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 6.1e-89 331.3 226 74.8
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 1.8e-88 329.7 227 76.7
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 3.0e-88 328.9 230 76.5
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 4.0e-88 328.6 228 78.5
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 4.0e-88 328.6 225 77.3
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 5.2e-88 328.2 228 76.8
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 6.8e-88 327.8 231 75.8
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.5e-87 326.6 227 75.8
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 2.0e-87 326.2 229 76.4
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 2.0e-87 326.2 229 76.4
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 3.4e-87 325.5 231 75.3
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 3.4e-87 325.5 228 76.3
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 4.4e-87 325.1 226 76.5
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 5.7e-87 324.7 229 76.9
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 7.5e-87 324.3 227 75.3
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 7.5e-87 324.3 227 78.0
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 9.8e-87 323.9 231 75.8
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 1.3e-86 323.6 223 76.7
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 1.3e-86 323.6 228 76.3
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 1.7e-86 323.2 229 75.1
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 1.7e-86 323.2 224 76.8
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 3.7e-86 322.0 230 73.9
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 3.7e-86 322.0 230 76.5
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 3.7e-86 322.0 226 76.5
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 4.9e-86 321.6 230 77.8
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 4.9e-86 321.6 229 74.7
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 6.4e-86 321.2 229 76.0
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.4e-86 321.2 228 75.4
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 6.4e-86 321.2 228 75.4
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 6.4e-86 321.2 226 72.1
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 8.3e-86 320.9 227 76.7
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 8.3e-86 320.9 226 75.7
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.1e-85 320.5 228 77.6
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.1e-85 320.5 228 74.1
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-85 320.1 230 77.4
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 1.4e-85 320.1 177 88.1
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.8e-85 319.7 227 74.4
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 1.8e-85 319.7 230 76.1
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 2.4e-85 319.3 226 73.9
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 2.4e-85 319.3 227 76.2
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 2.4e-85 319.3 229 74.2
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 2.4e-85 319.3 229 74.2
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 2.4e-85 319.3 228 73.7
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.4e-85 319.3 228 74.1
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 3.2e-85 318.9 227 76.2
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 7.0e-85 317.8 227 73.1
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 9.2e-85 317.4 230 72.6
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 9.2e-85 317.4 229 75.1
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 9.2e-85 317.4 176 87.5
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 9.2e-85 317.4 224 75.9
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 1.2e-84 317.0 226 74.3
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.2e-84 317.0 226 75.7
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.2e-84 317.0 226 74.8
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 1.6e-84 316.6 230 74.3
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 2.0e-84 316.2 228 72.8
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.7e-84 315.8 226 74.8
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 3.5e-84 315.5 227 74.4
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 3.5e-84 315.5 196 79.6
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 4.6e-84 315.1 226 72.6
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 5.9e-84 314.7 229 73.8
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 5.9e-84 314.7 226 74.3
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 5.9e-84 314.7 226 75.2
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 1.3e-83 313.5 226 72.1
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 1.3e-83 313.5 227 74.9
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 1.7e-83 313.2 227 74.4
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 1.7e-83 313.2 229 74.7
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 2.3e-83 312.8 226 73.0
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 3.9e-83 312.0 229 74.7
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 3.9e-83 312.0 227 74.4
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 5.0e-83 311.6 232 70.7
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 5.0e-83 311.6 226 71.7
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 5.0e-83 311.6 224 74.1
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 5.0e-83 311.6 231 73.2
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 6.6e-83 311.2 226 72.6
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 6.6e-83 311.2 228 75.9
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 6.6e-83 311.2 230 74.3
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 8.6e-83 310.8 226 72.6
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 8.6e-83 310.8 226 72.6
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 8.6e-83 310.8 226 72.6
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 8.6e-83 310.8 226 72.6
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 4.3e-82 308.5 226 73.5
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 4.3e-82 308.5 224 73.7
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 9.5e-82 307.4 226 71.7
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.2e-81 307.0 166 86.7
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.2e-81 307.0 166 86.7
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 2.1e-81 306.2 226 70.4
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 4.7e-81 305.1 222 71.2
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 4.7e-81 305.1 176 83.5
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 4.7e-81 305.1 197 79.2
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 4.7e-81 305.1 237 71.7
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 8.0e-81 304.3 201 78.1
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 1.8e-80 303.1 221 70.6
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 1.8e-80 303.1 221 70.6
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.8e-80 303.1 222 71.6
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 2.3e-80 302.8 227 70.9
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 2.3e-80 302.8 227 70.9
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 2.3e-80 302.8 227 70.9
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 1.5e-79 300.1 238 68.9
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.4e-79 298.5 223 73.1
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 5.8e-79 298.1 219 74.0
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 7.5e-79 297.7 221 69.2
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.3e-78 297.0 232 70.3
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 2.9e-78 295.8 232 68.1
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 3.2e-77 292.4 232 67.2
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 4.1e-77 292.0 231 70.6
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 7.0e-77 291.2 234 68.8
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 9.2e-77 290.8 232 69.4
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 1.6e-76 290.0 155 89.0
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 2.7e-76 289.3 153 89.5
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 2.7e-76 289.3 233 67.0
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 1.2e-73 280.4 236 66.1
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 7.5e-71 271.2 205 72.2
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.1e-68 263.1 149 94.6
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.4e-64 250.4 203 63.1
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 8.9e-64 247.7 225 64.0
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 2.6e-63 246.1 200 62.5
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.6e-63 246.1 204 61.3
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 9.9e-63 244.2 202 61.9
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 1.3e-62 243.8 225 63.6
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 1.3e-62 243.8 177 67.2
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.8e-62 242.3 244 54.1
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 9.2e-61 237.7 204 60.3
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.4e-56 223.0 224 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 4.4e-55 218.8 201 57.7
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 8.7e-51 204.5 149 75.2
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 2.6e-47 193.0 160 56.9
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 3.4e-47 192.6 235 47.7
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 1.6e-36 157.1 180 46.1
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 2.6e-31 139.8 75 81.3
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 5.0e-22 109.0 60 80.0
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.1e-21 107.8 129 58.9
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.4e-21 107.5 128 62.5
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 4.6e-20 102.4 133 48.1
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.1e-12 77.0 109 51.4
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.7e-09 67.4 44 79.5


User provided reference genes

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