Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 0.0e+00 1375.1 698 100.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 1.6e-204 716.8 1079 40.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 3.0e-195 686.0 1078 40.2
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 6.8e-192 674.9 1079 39.4
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 2.0e-191 673.3 1078 38.9
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 7.1e-189 664.8 1090 38.3
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 9.2e-189 664.5 1073 39.0
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 2.1e-188 663.3 1088 38.6
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 7.8e-188 661.4 1078 38.8
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.3e-187 659.8 1079 38.6
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 3.0e-187 659.4 1072 39.3
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 3.9e-187 659.1 1079 38.8
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.1e-186 657.5 1071 39.1
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.9e-186 656.8 1074 38.9
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.3e-186 654.8 1076 39.1
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 1.6e-185 653.7 1024 40.2
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 3.6e-185 652.5 1067 39.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 4.7e-185 652.1 1064 39.4
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 1.4e-184 650.6 1071 39.0
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 2.3e-184 649.8 1085 37.9
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 4.0e-184 649.0 1087 37.6
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 1.2e-183 647.5 1064 39.0
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 1.5e-183 647.1 1173 36.9
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 2.0e-183 646.7 1064 39.1
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 2.6e-183 646.4 1062 39.2
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 5.8e-183 645.2 1063 38.9
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 7.6e-183 644.8 1071 38.9
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 7.6e-183 644.8 1075 39.4
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 1.7e-182 643.7 1145 36.9
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.7e-182 642.5 1089 37.5
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 4.9e-182 642.1 1082 37.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 4.9e-182 642.1 1087 37.4
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 1.1e-181 641.0 1076 38.2
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 1.9e-181 640.2 1063 38.8
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 1.9e-181 640.2 1078 38.2
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 2.4e-181 639.8 1077 37.8
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.4e-181 639.8 1086 37.2
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 2.4e-181 639.8 1077 38.0
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 2.7e-180 636.3 1077 37.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 4.6e-180 635.6 1081 38.2
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 7.8e-180 634.8 1059 38.9
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 1.7e-179 633.6 1077 37.5
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 1.7e-179 633.6 1069 38.2
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 7.3e-178 628.2 1069 37.5
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.8e-177 626.3 1019 39.6
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 8.1e-177 624.8 1065 38.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 4.0e-176 622.5 1002 40.3
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.0e-175 620.2 1090 37.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 7.6e-175 618.2 1079 37.3
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 8.4e-174 614.8 1074 37.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 1.4e-173 614.0 1074 37.2
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 9.3e-173 611.3 1036 38.4
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.7e-171 607.1 1079 36.5
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 6.6e-171 605.1 876 41.7
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 8.7e-171 604.7 1075 37.4
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 1.1e-170 604.4 1089 36.1
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 3.6e-169 599.4 1156 35.3
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 4.8e-169 599.0 1073 36.5
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 1.8e-168 597.0 1073 36.6
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 2.4e-168 596.7 1077 37.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.4e-168 596.7 1164 34.9
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 6.9e-168 595.1 1071 36.1
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 6.4e-166 588.6 885 41.8
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 1.9e-165 587.0 1078 36.5
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 1.2e-164 584.3 1118 35.0
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 2.1e-164 583.6 1124 35.7
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 6.0e-164 582.0 849 42.5
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 1.0e-163 581.3 1078 36.7
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 3.9e-163 579.3 1067 36.4
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 5.1e-163 578.9 1044 37.6
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 1.9e-162 577.0 1072 36.5
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 2.8e-161 573.2 1066 36.9
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 3.1e-160 569.7 1073 36.3
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 5.3e-160 568.9 1067 36.0
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 9.0e-160 568.2 745 44.4
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 1.5e-159 567.4 1069 35.9
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 3.8e-158 562.8 858 40.6
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 8.4e-158 561.6 1051 36.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 5.4e-157 558.9 1076 36.1
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 3.3e-154 549.7 1076 35.7
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 3.3e-154 549.7 1070 34.9
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 1.3e-153 547.7 1107 34.5
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 8.1e-153 545.0 1067 35.6
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 3.1e-152 543.1 849 40.0
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 1.1e-146 524.6 1068 35.3
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 3.7e-145 519.6 1088 34.4
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 1.8e-144 517.3 1067 34.9
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 8.4e-142 508.4 1066 34.4
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 9.3e-141 505.0 383 65.5
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 1.8e-139 500.7 942 37.2
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.4e-136 491.1 383 64.2
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 1.3e-134 484.6 384 64.3
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 3.1e-128 463.4 383 60.8
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.6e-116 424.5 437 53.3
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 4.8e-113 412.9 732 38.7
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 4.1e-112 409.8 384 54.9
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 3.0e-107 393.7 395 52.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 1.5e-101 374.8 891 32.5
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 1.5e-98 364.8 398 49.2
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.4e-96 358.2 365 52.6
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 2.7e-87 327.4 886 29.6
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.8e-84 317.4 823 29.3
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 3.2e-80 303.9 824 29.1
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.0e-78 298.9 477 39.6
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.5e-77 295.0 194 73.7
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.2e-76 292.0 317 51.4
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.5e-74 285.0 186 73.7
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 5.6e-69 266.5 254 55.5
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 7.3e-69 266.2 502 33.9
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 4.4e-66 256.9 181 69.1
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 4.1e-64 250.4 475 34.3
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 2.7e-63 247.7 158 73.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.1e-59 235.7 143 76.2
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.6e-54 216.5 224 51.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-52 212.2 325 42.2
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.5e-50 205.3 200 58.0
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 9.3e-48 196.1 166 57.8
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 2.0e-42 178.3 204 48.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.9e-41 174.5 160 53.8
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 5.1e-38 163.7 259 41.7
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 5.1e-38 163.7 259 41.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.5e-37 162.2 313 34.8
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 3.1e-35 154.5 166 50.6
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 5.3e-35 153.7 133 54.9
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.0e-34 151.8 132 55.3
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.7e-33 148.7 401 30.9
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 8.7e-30 136.3 298 32.2
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 3.3e-29 134.4 203 41.9
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 6.3e-28 130.2 337 27.9
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.5e-25 120.2 160 43.8
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.1e-24 119.4 161 43.5
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.2e-24 116.7 145 45.5
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 6.1e-23 113.6 160 40.0
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 3.0e-22 111.3 308 29.2
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 1.9e-21 108.6 96 57.3
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.2e-20 105.1 73 61.6
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-19 102.8 90 57.8
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 9.1e-19 99.8 100 53.0
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.0e-17 96.3 54 75.9
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.7e-17 95.5 95 52.6
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 6.5e-17 93.6 110 47.3
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 1.6e-15 89.0 76 56.6
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 6.1e-15 87.0 72 55.6
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 8.2e-12 76.6 88 46.6
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.2e-08 64.7 79 38.0
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.0e-06 59.7 59 59.3
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 2.3e-06 58.5 38 78.9
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 6.7e-06 57.0 69 39.1


User provided reference genes

Program Settings