Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 2530.4 1275 100.0
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1359.0 1313 56.3
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1350.9 1313 56.2
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1321.6 1322 54.3
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1304.3 1298 54.4
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1281.5 1312 53.3
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1269.6 1304 53.4
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1264.6 1304 51.2
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1263.8 1304 53.4
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1260.7 1302 52.5
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1258.8 1305 52.7
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1255.0 1298 52.4
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1253.4 1302 52.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1251.5 1307 52.5
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1243.4 1295 52.2
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1243.0 1258 52.5
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1234.6 1303 52.0
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1230.7 1295 51.8
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1228.0 1296 51.8
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1228.0 1320 51.1
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1224.9 1296 51.9
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1224.5 1329 50.9
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1224.5 1310 51.5
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1221.8 1305 51.3
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1221.5 1281 52.6
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1219.5 1301 50.8
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1214.5 1299 51.3
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1213.7 1318 51.4
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1211.8 1301 50.9
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1210.7 1301 50.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1209.1 1314 50.8
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1209.1 1287 50.5
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1208.0 1340 50.1
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1203.7 1304 49.4
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1203.3 1298 50.6
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1201.0 1308 50.7
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1200.3 1280 51.8
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1197.2 1306 50.3
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1194.1 1365 49.5
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1192.9 1334 49.8
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1191.4 1297 50.2
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1190.3 1306 50.3
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1187.2 1307 50.1
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1187.2 1296 48.8
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1180.6 1321 49.7
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1178.3 1244 52.0
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1177.2 1300 49.7
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1176.8 1301 50.0
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1176.8 1300 50.9
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1175.6 1300 49.3
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1175.6 1306 50.2
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1175.2 1306 49.5
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1173.3 1306 49.5
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1171.4 1306 49.3
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1171.4 1300 49.1
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1166.8 1309 49.4
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1166.0 1289 50.0
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1164.8 1403 46.5
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1164.4 1295 49.8
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1162.5 1301 49.2
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1162.1 1303 49.1
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1161.4 1307 49.1
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1160.2 1296 48.6
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1159.4 1322 48.8
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1159.4 1303 49.0
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1155.2 1436 46.6
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1154.4 1301 48.9
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1153.7 1323 48.7
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1152.9 1373 47.2
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1151.7 1291 48.6
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1151.3 1308 48.7
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1149.4 1297 49.0
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1149.4 1300 48.9
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1149.4 1190 52.3
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1149.0 1317 48.6
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1148.7 1301 48.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1148.3 1297 49.0
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1147.9 1105 55.3
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1147.5 1301 48.9
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1145.2 1301 48.7
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1143.6 1301 48.7
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1133.6 1293 47.6
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1132.5 1303 47.0
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1122.5 1291 48.2
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1107.4 1111 52.3
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1105.1 1079 53.9
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1091.3 1156 50.3
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1080.5 1293 46.2
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1077.4 1108 52.3
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1077.0 1297 45.4
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1076.6 1273 47.4
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1076.2 1306 47.5
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 5.1e-310 1068.1 1292 46.8
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 6.6e-310 1067.8 1124 51.8
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.6e-302 1040.8 1405 44.4
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 6.2e-300 1034.6 1392 45.0
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 8.1e-300 1034.2 1305 44.9
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 2.4e-296 1022.7 1292 44.1
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 2.4e-291 1006.1 1140 49.4
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.6e-287 993.4 1091 49.9
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.4e-283 979.5 1130 48.8
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 6.0e-279 964.9 1164 47.3
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 1.8e-227 793.9 1379 37.1
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 4.5e-226 789.3 1356 36.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.2e-218 764.6 650 60.3
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 8.3e-212 741.9 920 44.9
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 4.1e-211 739.6 1183 37.8
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.6e-208 729.2 853 48.2
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 6.6e-177 625.9 944 39.8
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.1e-174 618.6 761 46.6
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.6e-151 541.6 1289 30.1
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 6.7e-129 466.5 573 46.8
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 8.5e-124 449.5 350 66.3
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 3.2e-123 447.6 378 61.9
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.4e-118 431.4 658 39.1
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 2.9e-116 424.5 505 49.3
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 8.6e-92 343.2 327 55.4
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.7e-79 302.4 1078 24.4
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 8.3e-79 300.1 220 62.3
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.6e-77 295.8 465 40.2
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 4.7e-66 257.7 851 25.5
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.7e-63 249.2 213 60.6
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.8e-63 248.1 208 60.6
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.2e-62 245.0 475 33.9
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 3.9e-60 238.0 213 54.9
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.8e-58 231.9 189 54.5
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-57 229.9 417 34.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.5e-48 199.5 164 55.5
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.9e-46 192.6 293 39.9
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 3.5e-45 188.3 731 24.6
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 7.9e-45 187.2 147 56.5
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 6.9e-41 174.1 840 22.6
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 6.5e-39 167.5 168 53.0
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.1e-33 148.3 216 38.0
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.5e-30 137.9 114 71.1
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.6e-29 134.8 210 38.1
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 6.1e-29 134.4 113 74.3
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.1e-28 131.3 93 65.6
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.5e-27 129.0 122 53.3
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.1e-25 122.1 110 53.6
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 2.0e-24 119.4 105 54.3
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 2.6e-24 119.0 181 38.1
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.9e-24 117.9 143 47.6
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.0e-23 117.1 141 44.0
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 6.1e-21 107.8 385 26.5
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 5.1e-20 104.8 152 40.8
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.3e-18 100.1 195 32.8
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-18 100.1 79 60.8
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.4e-16 92.0 86 55.8
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 2.9e-15 89.0 85 54.1
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.3e-12 79.3 62 54.8
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.5e-11 76.6 64 53.1
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 2.8e-10 72.4 57 56.1
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 2.4e-09 69.3 81 63.0
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 5.3e-09 68.2 236 26.7
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.0e-08 66.2 200 32.0
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 2.0e-08 66.2 103 39.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 5.0e-07 61.6 73 65.8


User provided reference genes

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