Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.9e-70 268.5 138 100.0
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.2e-54 215.7 138 78.3
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.5e-53 213.0 138 76.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 73.6
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 6.3e-49 197.6 136 74.3
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 7.0e-48 194.1 141 73.0
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.6e-47 192.2 140 72.1
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.0e-46 190.3 140 70.0
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 2.9e-46 188.7 138 70.3
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 3.8e-46 188.3 139 69.1
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 6.5e-46 187.6 139 69.1
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.5e-46 187.2 141 70.9
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.5e-45 186.4 140 70.7
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.2e-45 185.3 141 69.5
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 4.2e-45 184.9 140 68.6
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.2e-45 184.9 138 70.3
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 5.5e-45 184.5 139 71.2
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 69.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 69.3
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.1e-44 182.6 141 68.1
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.1e-44 182.6 138 68.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.1e-44 182.6 138 68.8
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.1e-44 182.6 138 68.8
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.7e-44 182.2 140 67.9
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 2.7e-44 182.2 139 66.9
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.7e-44 182.2 134 70.9
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 4.7e-44 181.4 140 69.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 4.7e-44 181.4 139 66.9
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.7e-44 181.4 155 63.2
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 6.1e-44 181.0 136 66.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.1e-44 181.0 140 67.1
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 8.0e-44 180.6 140 67.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 8.0e-44 180.6 140 67.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 8.0e-44 180.6 135 68.9
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 8.0e-44 180.6 140 69.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.8e-43 179.5 140 69.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.3e-43 179.1 139 68.3
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.3e-43 179.1 139 68.3
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.3e-43 179.1 139 66.9
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 3.0e-43 178.7 140 68.6
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.0e-43 178.7 139 67.6
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.0e-43 178.3 138 67.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 5.2e-43 177.9 139 67.6
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 5.2e-43 177.9 142 71.8
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 5.2e-43 177.9 140 67.1
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 5.2e-43 177.9 140 65.7
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 6.8e-43 177.6 140 66.4
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 8.8e-43 177.2 142 68.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.2e-42 176.8 138 67.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.2e-42 176.8 140 67.1
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.5e-42 176.4 140 65.7
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.5e-42 176.4 140 67.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.5e-42 176.4 140 65.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 67.1
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 67.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 2.0e-42 176.0 134 69.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.0e-42 176.0 139 67.6
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.4e-42 175.3 140 66.4
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.4e-42 175.3 134 69.4
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 4.4e-42 174.9 141 66.7
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 4.4e-42 174.9 140 66.4
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 4.4e-42 174.9 139 66.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 4.4e-42 174.9 139 66.2
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 4.4e-42 174.9 140 65.0
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.7e-42 174.5 141 69.5
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 5.7e-42 174.5 139 67.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 5.7e-42 174.5 140 64.3
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.5e-42 174.1 138 65.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 7.5e-42 174.1 139 66.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 7.5e-42 174.1 139 67.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 9.8e-42 173.7 142 66.9
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.3e-41 173.3 142 66.9
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.3e-41 173.3 139 64.7
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.7e-41 172.9 139 65.5
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.7e-41 172.9 137 66.4
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.2e-41 172.6 140 67.1
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.2e-41 172.6 139 65.5
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 2.2e-41 172.6 139 64.7
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.2e-41 172.6 139 64.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.8e-41 172.2 139 64.7
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.8e-41 172.2 122 72.1
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.7e-41 171.8 141 68.1
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 63.6
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.8e-41 171.4 139 65.5
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 4.8e-41 171.4 143 67.1
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 4.8e-41 171.4 143 67.1
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 4.8e-41 171.4 140 64.3
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 6.3e-41 171.0 140 64.3
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.3e-41 170.6 137 67.2
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 8.3e-41 170.6 140 67.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.1e-40 170.2 141 67.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.1e-40 170.2 143 65.7
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.8e-40 169.5 139 64.7
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.8e-40 169.5 138 65.2
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.4e-40 169.1 143 67.1
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 3.1e-40 168.7 140 65.7
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.1e-40 168.3 138 63.0
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 4.1e-40 168.3 135 65.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 7.0e-40 167.5 139 64.0
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 9.1e-40 167.2 140 63.6
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 9.1e-40 167.2 140 63.6
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 9.1e-40 167.2 140 63.6
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 9.1e-40 167.2 139 64.0
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.0e-39 166.0 138 65.2
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.0e-39 166.0 139 64.7
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.5e-39 165.2 138 63.8
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.5e-39 165.2 138 63.8
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.5e-39 165.2 138 63.8
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.5e-39 165.2 138 63.8
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.5e-39 165.2 138 63.8
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.5e-39 165.2 138 63.0
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.5e-39 165.2 121 68.6
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 5.9e-39 164.5 139 63.3
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 5.9e-39 164.5 139 63.3
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-38 163.7 140 62.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-38 163.7 140 62.9
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.0e-38 163.7 141 62.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.3e-38 163.3 139 63.3
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.3e-38 163.3 141 63.8
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.3e-38 163.3 140 62.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.3e-38 163.3 141 62.4
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.7e-38 162.9 140 62.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-38 162.9 139 62.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-38 162.9 139 62.6
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-38 162.9 139 62.6
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 1.7e-38 162.9 139 62.6
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.2e-38 162.5 140 62.1
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.2e-38 162.5 140 62.1
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.2e-38 162.5 140 61.4
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.8e-38 161.8 139 62.6
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.8e-38 161.8 138 62.3
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.0e-38 161.4 137 63.5
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 6.5e-38 161.0 141 63.8
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.2e-36 156.8 115 68.7
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.6e-36 156.4 136 64.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 6.1e-36 154.5 138 60.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 3.0e-35 152.1 144 61.1
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.6e-34 149.1 131 61.1
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.4e-34 148.7 139 59.7
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 5.7e-34 147.9 140 60.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.2e-33 146.0 138 56.5
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.9e-33 144.8 146 55.5
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 6.3e-33 144.4 88 80.7
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 5.4e-32 141.4 89 76.4
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.5e-31 138.7 118 64.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.7e-31 137.5 154 54.5
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.7e-30 136.3 109 63.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.9e-30 135.6 109 66.1
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.5e-29 132.5 155 52.9
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.2e-29 131.7 111 67.6
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.5e-29 131.3 120 56.7
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.5e-29 131.3 120 58.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.1e-28 129.4 134 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.8e-28 129.0 119 57.1
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 6.1e-28 127.9 140 55.7
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.8e-24 116.3 68 76.5
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.5e-21 105.9 88 64.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 4.7e-20 101.7 89 62.9
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 6.1e-20 101.3 136 43.4
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 8.9e-19 97.4 89 59.6
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.2e-18 97.1 52 84.6
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.1e-16 90.5 73 61.6
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.1e-13 80.5 50 76.0
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 6.2e-12 74.7 72 52.8
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.2e-08 62.4 78 50.0


User provided reference genes

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