Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 0.0e+00 1697.6 855 100.0
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 0.0e+00 1433.7 840 86.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.6e-219 766.9 905 51.0
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.6e-219 766.9 672 59.1
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.4e-218 763.8 909 49.9
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 5.7e-217 758.4 712 56.7
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 4.9e-216 755.4 845 50.5
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.4e-215 753.8 710 57.6
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.1e-215 752.3 711 57.1
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.2e-214 750.7 713 56.7
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.6e-214 750.4 706 57.1
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.7e-214 749.6 830 51.2
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 7.8e-214 748.0 709 56.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 7.8e-214 748.0 712 55.5
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.7e-213 746.9 878 49.4
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 1.7e-213 746.9 731 56.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 5.0e-213 745.3 712 55.2
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 3.3e-212 742.7 704 57.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.3e-212 742.7 712 54.9
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 4.3e-212 742.3 739 53.9
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 5.6e-212 741.9 723 54.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 7.3e-212 741.5 771 53.8
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.8e-211 739.6 829 51.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 6.1e-211 738.4 667 59.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 5.2e-210 735.3 746 55.4
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 8.9e-210 734.6 861 48.1
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.5e-209 733.8 718 54.5
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.0e-209 733.4 795 50.7
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 2.6e-209 733.0 789 50.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 4.4e-209 732.3 796 50.3
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 5.8e-209 731.9 714 55.0
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.3e-208 730.7 724 54.0
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 6.4e-208 728.4 793 50.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 8.3e-208 728.0 784 51.4
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 7.0e-207 724.9 675 56.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.2e-206 724.2 720 55.3
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.6e-206 723.8 706 56.4
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.7e-206 723.0 723 54.2
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.7e-205 720.3 704 54.5
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 3.0e-205 719.5 767 51.2
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 3.9e-205 719.2 746 52.8
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 5.0e-205 718.8 856 48.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 6.6e-205 718.4 677 56.0
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.1e-204 717.6 733 53.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 4.3e-204 715.7 739 53.5
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 9.5e-204 714.5 861 47.4
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.6e-203 713.8 717 54.1
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 8.0e-203 711.4 770 51.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 4.0e-202 709.1 816 47.7
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.0e-202 709.1 738 53.5
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 8.9e-202 708.0 822 49.6
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.2e-201 707.6 790 49.5
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.6e-201 706.4 710 54.1
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-200 704.1 673 56.3
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 2.9e-200 703.0 793 50.7
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.9e-200 703.0 664 56.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 3.7e-200 702.6 674 56.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 3.7e-200 702.6 855 46.1
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.7e-200 702.6 768 52.2
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.1e-199 701.0 707 54.5
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.4e-199 699.9 861 47.4
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.6e-198 695.7 770 50.8
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.0e-197 694.5 768 50.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.0e-197 694.5 768 50.9
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.7e-197 693.7 736 53.3
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 6.6e-197 691.8 682 54.3
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 6.6e-197 691.8 687 53.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 8.6e-197 691.4 774 51.0
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.9e-196 690.3 759 51.8
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 4.3e-196 689.1 788 48.9
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 2.8e-195 686.4 746 51.5
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.6e-195 686.0 785 48.9
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.6e-195 686.0 911 46.3
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.1e-194 682.9 790 48.9
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 5.8e-193 678.7 794 48.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 7.5e-193 678.3 861 46.3
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 7.5e-193 678.3 861 46.3
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.3e-192 677.6 791 47.8
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 2.2e-192 676.8 792 49.6
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 4.1e-191 672.5 784 47.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.2e-190 671.0 826 47.2
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 2.1e-190 670.2 704 52.3
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.5e-190 669.5 710 52.8
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.0e-190 668.7 710 52.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 7.8e-190 668.3 788 48.1
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.7e-189 667.2 702 53.1
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.7e-189 667.2 708 52.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.3e-189 666.8 780 48.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.9e-188 663.7 714 51.8
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 4.3e-188 662.5 790 47.7
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 4.7e-187 659.1 658 52.1
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 6.8e-186 655.2 799 46.9
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.5e-185 654.1 857 45.3
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.3e-184 651.0 822 46.0
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 7.8e-182 641.7 785 46.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.3e-181 641.0 677 50.7
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 5.6e-180 635.6 605 55.4
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-179 634.4 671 53.9
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.1e-178 631.3 700 49.7
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.1e-178 631.3 864 43.6
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 7.6e-177 625.2 880 42.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 7.6e-177 625.2 670 53.1
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 5.4e-175 619.0 753 46.3
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.3e-172 609.8 708 49.2
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.6e-171 607.4 690 48.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 9.9e-169 598.2 529 59.2
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.9e-168 596.7 599 54.8
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 9.6e-164 581.6 606 50.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.1e-158 563.9 670 47.2
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.3e-155 554.7 689 44.4
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.3e-148 529.6 669 45.0
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 8.2e-147 525.4 657 44.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.0e-145 520.8 660 45.0
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.9e-141 506.5 421 60.6
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 3.9e-141 506.5 622 43.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.7e-141 505.8 409 62.8
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.1e-138 496.9 543 50.6
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 8.8e-125 452.2 476 51.7
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.4e-124 449.9 456 52.0
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 3.0e-109 400.6 663 38.3
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.5e-108 398.3 686 35.7
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.3e-107 392.9 433 51.3
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 8.9e-101 372.5 478 42.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.6e-95 353.2 479 43.8
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 6.4e-91 339.7 286 60.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.1e-70 271.6 233 59.7
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-68 265.4 404 40.3
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.2e-65 255.8 296 49.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.6e-65 255.4 292 50.7
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.1e-61 242.7 234 55.1
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.5e-57 227.6 244 51.2
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.7e-56 223.0 174 61.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 7.6e-52 209.9 181 60.2
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-50 204.9 173 59.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 9.6e-47 193.0 256 43.8
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 5.9e-36 157.1 131 58.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.9e-36 157.1 131 60.3
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-35 155.6 230 42.6
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.1e-34 152.9 168 47.6
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.4e-34 152.5 131 58.0
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.1e-33 148.7 318 34.6
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 6.3e-30 137.1 523 27.2
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 3.2e-26 124.8 114 53.5
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.3e-23 114.8 196 37.8
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.4e-21 109.4 539 24.9
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 8.8e-16 90.1 73 57.5
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.2e-10 71.2 41 78.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.8e-08 65.9 75 44.0
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 6.7e-08 63.9 574 21.3
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.1e-07 63.2 115 34.8
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 5.7e-07 60.8 47 55.3


User provided reference genes

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