Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.3e-201 705.3 336 100.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 8.6e-92 341.3 330 53.6
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.5e-91 340.5 341 52.2
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.0e-88 330.1 308 54.2
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.5e-83 313.9 344 48.3
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.1e-81 307.8 307 49.5
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.0e-81 305.8 308 51.6
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.5e-80 303.9 308 50.0
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 2.6e-80 303.1 330 49.1
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 7.5e-80 301.6 310 52.3
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.4e-78 297.4 331 47.7
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.9e-78 297.0 308 49.0
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 9.2e-78 294.7 195 75.9
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 9.2e-78 294.7 311 50.5
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 9.2e-78 294.7 311 50.5
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.2e-77 294.3 307 49.2
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.0e-76 291.2 304 49.0
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.0e-76 291.2 310 48.7
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.3e-76 290.8 308 50.0
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.9e-76 289.3 309 47.9
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 5.1e-76 288.9 309 47.9
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.1e-75 287.7 305 48.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.1e-75 287.7 307 47.9
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 1.9e-75 287.0 332 47.0
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.5e-75 286.6 308 46.8
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 4.3e-75 285.8 304 50.0
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.8e-74 283.1 307 47.9
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 4.0e-73 279.3 307 46.9
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.0e-72 276.9 308 47.7
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.0e-72 276.9 331 44.7
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.6e-72 276.6 308 47.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 4.4e-72 275.8 312 46.8
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 4.4e-72 275.8 308 45.5
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 4.4e-72 275.8 307 46.3
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 5.8e-72 275.4 334 45.2
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 7.6e-72 275.0 308 49.0
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.4e-70 270.8 312 46.2
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.4e-70 270.8 309 46.9
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.9e-70 270.4 330 43.6
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.4e-70 270.0 308 44.8
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.2e-70 269.6 308 44.8
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 5.4e-70 268.9 308 44.2
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 2.7e-69 266.5 308 43.8
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 7.8e-69 265.0 329 41.9
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 3.9e-68 262.7 308 45.1
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 5.3e-65 252.3 310 45.5
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.6e-64 250.0 326 43.6
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 2.6e-64 250.0 344 41.9
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.7e-63 247.3 314 43.6
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.1e-62 244.6 307 43.3
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.4e-62 244.2 309 42.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.2e-62 243.0 309 42.4
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.2e-62 243.0 309 42.4
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 9.3e-62 241.5 366 41.0
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.7e-61 240.0 309 42.1
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.0e-60 238.0 307 44.0
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.3e-60 236.9 309 41.7
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.1e-60 235.7 312 42.3
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 4.3e-59 232.6 366 39.9
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 2.8e-58 229.9 317 41.3
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 4.8e-58 229.2 308 41.2
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.1e-57 226.5 329 41.6
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 4.0e-57 226.1 310 41.0
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 6.9e-57 225.3 309 41.1
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.5e-56 224.2 308 41.9
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 5.8e-56 222.2 344 39.2
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.2e-55 220.3 305 40.7
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.8e-55 219.5 304 40.1
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 5.4e-54 215.7 282 42.6
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 7.1e-54 215.3 331 41.1
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-52 210.7 307 39.4
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.0e-52 209.9 303 38.6
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 3.9e-52 209.5 312 37.5
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 5.1e-52 209.1 321 37.7
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.1e-52 209.1 321 37.7
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 5.1e-52 209.1 310 39.7
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.5e-51 207.6 312 38.1
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.9e-51 207.2 321 37.7
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.3e-51 206.5 321 37.7
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 4.3e-51 206.1 310 40.3
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 4.3e-51 206.1 312 40.4
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 7.4e-51 205.3 304 39.8
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 9.6e-51 204.9 292 39.4
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.3e-50 204.5 312 39.4
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.8e-50 203.4 316 39.2
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.8e-50 203.4 309 38.5
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.8e-50 203.4 310 41.0
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 4.8e-50 202.6 311 37.0
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.2e-50 202.2 311 40.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 8.1e-50 201.8 312 39.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 2.4e-49 200.3 237 47.3
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 4.0e-49 199.5 318 36.8
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.6e-48 196.8 312 38.1
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 3.4e-48 196.4 309 39.8
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.7e-47 194.1 281 41.6
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.4e-46 191.0 333 38.4
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 2.5e-46 190.3 292 36.6
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 3.2e-46 189.9 281 40.9
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 7.1e-46 188.7 285 40.4
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 7.1e-46 188.7 419 31.7
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 7.9e-45 185.3 305 37.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 7.9e-45 185.3 322 36.0
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 4.3e-43 179.5 193 50.8
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 9.0e-41 171.8 328 35.1
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.5e-40 169.5 322 33.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.8e-40 169.1 302 35.4
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.3e-39 167.9 233 42.9
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 2.2e-39 167.2 329 33.4
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 5.0e-39 166.0 236 37.7
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 5.5e-38 162.5 315 35.2
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 9.3e-38 161.8 221 41.6
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-37 161.4 240 35.8
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 1.6e-37 161.0 324 33.3
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.6e-37 161.0 300 32.3
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.1e-37 160.6 313 36.4
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.7e-37 160.2 299 33.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.5e-37 159.8 309 33.0
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.5e-37 159.8 309 33.0
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 4.6e-37 159.5 305 33.4
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.6e-37 159.5 304 34.5
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.8e-36 157.5 309 35.9
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.8e-36 157.5 308 34.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 3.0e-36 156.8 305 33.4
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 6.7e-36 155.6 305 33.8
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 6.7e-36 155.6 307 33.2
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.3e-34 151.4 305 31.8
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.8e-34 149.4 304 32.6
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.1e-33 148.3 305 31.8
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.8e-33 147.5 271 34.3
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 4.5e-32 142.9 306 35.3
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.0e-31 141.7 301 35.2
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.0e-31 141.7 301 35.2
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.3e-31 141.4 302 35.1
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.2e-31 140.6 323 32.2
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.9e-31 140.2 334 32.6
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 5.0e-31 139.4 306 34.0
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.5e-31 138.7 309 33.0
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 2.3e-28 130.6 325 31.7
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.5e-27 127.9 281 33.8
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 4.3e-27 126.3 190 40.5
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.3e-26 124.8 248 34.3
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 3.7e-26 123.2 200 34.5
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.1e-25 120.2 126 50.0
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 7.9e-21 105.5 301 29.2
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.1e-19 101.7 254 31.1
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.1e-17 93.6 74 60.8
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.5e-16 91.3 102 49.0
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 2.0e-16 90.9 272 27.9
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 7.7e-16 89.0 227 28.6
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.3e-12 77.4 116 36.2
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.0e-11 74.3 59 57.6
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 7.4e-11 72.4 64 48.4
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 1.3e-10 71.6 65 50.8
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 3.7e-10 70.1 71 45.1
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 2.4e-09 67.4 98 43.9
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 5.3e-09 66.2 101 43.6
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.6e-08 63.9 130 27.7
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 4.5e-08 63.2 85 40.0
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.0e-07 59.7 84 45.2
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.9e-06 57.8 70 44.3


User provided reference genes

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