Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0802 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 4.9e-66 254.2 120 100.0
CDE02G2836 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 6.9e-52 207.2 120 85.8
CDE04G3632 Ceratophyllum demersum HOM05D000050 ORTHO05D002548 4.5e-35 151.4 92 78.3
CSS0036169 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 9.1e-28 127.1 124 54.0
Atru.chr2.1973 Acer truncatum HOM05D000578 ORTHO05D000422 1.7e-26 122.9 126 50.8
Atru.chr2.1936 Acer truncatum HOM05D000578 ORTHO05D000422 3.8e-26 121.7 126 50.0
Dinv13364 Davidia involucrata HOM05D000578 ORTHO05D000422 8.5e-26 120.6 123 53.7
CiPaw.11G155800 Carya illinoinensis HOM05D000578 ORTHO05D000422 1.9e-25 119.4 128 51.6
CsaV3_4G008210 Cucumis sativus L. HOM05D000578 ORTHO05D000422 1.9e-25 119.4 124 52.4
Actinidia39421 Actinidia chinensis HOM05D000578 ORTHO05D000422 3.2e-25 118.6 127 51.2
QL08p024210 Quercus lobata HOM05D000578 ORTHO05D000422 4.2e-25 118.2 126 51.6
ClCG07G010120 Citrullus lanatus HOM05D000578 ORTHO05D000422 9.4e-25 117.1 127 52.0
MELO3C016115.2 Cucumis melo HOM05D000578 ORTHO05D000422 9.4e-25 117.1 124 51.6
Haze_09247 Corylus avellana HOM05D000578 ORTHO05D000422 1.2e-24 116.7 103 56.3
Gohir.A01G047800 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.6e-24 116.3 116 50.9
TWI39G0909 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 2.1e-24 115.9 127 50.4
COL.COLO4_17474 Corchorus olitorius HOM05D000578 ORTHO05D000422 2.7e-24 115.5 122 49.2
Cfa019515 Carpinus fangiana HOM05D000578 ORTHO05D000422 6.1e-24 114.4 129 48.8
Lj8A146G67 Lonicera japonica HOM05D000578 ORTHO05D000422 6.1e-24 114.4 114 50.9
ECA240G2705 Erigeron canadensis HOM05D000578 ORTHO05D000422 8.0e-24 114.0 125 47.2
Hma1.2p1_0050F.1_g028790 Hydrangea macrophylla HOM05D000578 ORTHO05D000422 1.4e-23 113.2 125 50.4
Actinidia12603 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.8e-23 112.8 125 51.2
Ciclev10021488m.g Citrus clementina HOM05D000578 ORTHO05D000422 1.8e-23 112.8 118 50.8
Nitab4.5_0003230g0030 Nicotiana tabacum HOM05D000578 ORTHO05D000422 1.8e-23 112.8 125 51.2
PSO675G0984 Papaver somniferum HOM05D000578 ORTHO05D000422 1.8e-23 112.8 126 45.2
Nitab4.5_0000347g0020 Nicotiana tabacum HOM05D000578 ORTHO05D000422 3.0e-23 112.1 125 49.6
GSVIVG01014097001 Vitis vinifera HOM05D000578 ORTHO05D000422 3.0e-23 112.1 118 49.2
TWI38G0071 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 4.0e-23 111.7 128 47.7
Gohir.D01G038400 Gossypium hirsutum HOM05D000578 ORTHO05D000422 5.2e-23 111.3 116 50.0
Gorai.002G047200 Gossypium raimondii HOM05D000578 ORTHO05D000422 5.2e-23 111.3 116 50.0
Solyc07g062160.3 Solanum lycopersicum HOM05D000578 ORTHO05D000422 5.2e-23 111.3 126 50.0
Sopen07g030440 Solanum pennellii HOM05D000578 ORTHO05D000422 5.2e-23 111.3 126 50.0
Cc05_g10720 Coffea canephora HOM05D000578 ORTHO05D000422 8.8e-23 110.5 110 53.6
FvH4_3g17750 Fragaria vesca HOM05D000578 ORTHO05D000422 8.8e-23 110.5 126 47.6
FAN11G1029 Fragaria x ananassa HOM05D000578 ORTHO05D000422 8.8e-23 110.5 126 47.6
Manes.15G098000 Manihot esculenta HOM05D000578 ORTHO05D000422 8.8e-23 110.5 120 50.8
SalBow7G1681 Salvia bowleyana HOM05D000578 ORTHO05D000422 8.8e-23 110.5 126 49.2
PSO541G0141 Papaver somniferum HOM05D000578 ORTHO05D000422 1.2e-22 110.2 126 45.2
Prupe.4G156600 Prunus persica HOM05D000578 ORTHO05D000422 1.2e-22 110.2 125 46.4
Peaxi162Scf00111g01322 Petunia axillaris HOM05D000578 ORTHO05D000422 1.5e-22 109.8 126 49.2
RcHm_v2.0_Chr5g0029541 Rosa chinensis HOM05D000578 ORTHO05D000422 1.5e-22 109.8 127 47.2
Sed0013847 Sechium edule HOM05D000578 ORTHO05D000422 2.0e-22 109.4 127 49.6
TAR624G1389 Trochodendron aralioides HOM05D000578 ORTHO05D000422 2.0e-22 109.4 125 47.2
Sc16g0007740 Simmondsia chinensis HOM05D000578 ORTHO05D000422 3.3e-22 108.6 132 50.8
FAN16G1193 Fragaria x ananassa HOM05D000578 ORTHO05D000422 4.4e-22 108.2 125 46.4
Potri.011G105400 Populus trichocarpa HOM05D000578 ORTHO05D000422 4.4e-22 108.2 124 50.0
MSTRG.12861 Avicennia marina HOM05D000578 ORTHO05D000422 5.7e-22 107.8 110 51.8
Thecc.07G132800 Theobroma cacao HOM05D000578 ORTHO05D000422 5.7e-22 107.8 127 47.2
Cpa.g.sc77.61 Carica papaya HOM05D000578 ORTHO05D000422 9.7e-22 107.1 97 56.7
PGR083G2431 Punica granatum HOM05D000578 ORTHO05D000422 9.7e-22 107.1 117 50.4
Sed0025476 Sechium edule HOM05D000578 ORTHO05D000422 1.3e-21 106.7 129 49.6
Duzib268G1026 Durio zibethinus HOM05D000578 ORTHO05D000422 2.2e-21 105.9 102 51.0
Gohir.D11G303000 Gossypium hirsutum HOM05D000578 ORTHO05D000422 2.8e-21 105.5 110 49.1
Gorai.007G331700 Gossypium raimondii HOM05D000578 ORTHO05D000422 2.8e-21 105.5 110 49.1
Rhsim06G0211700 Rhododendron simsii HOM05D000578 ORTHO05D000422 2.8e-21 105.5 112 49.1
FAN25G0238 Fragaria x ananassa HOM05D000578 ORTHO05D000422 3.7e-21 105.1 124 46.0
EL10Ac4g08416 Beta vulgaris HOM05D000578 ORTHO05D000422 8.3e-21 104.0 101 48.5
Nitab4.5_0002943g0010 Nicotiana tabacum HOM05D000578 ORTHO05D000422 8.3e-21 104.0 111 52.3
PGSC0003DMG400007061 Solanum tuberosum HOM05D000578 ORTHO05D000422 8.3e-21 104.0 126 48.4
AUR62039579 Chenopodium quinoa HOM05D000578 ORTHO05D000422 1.1e-20 103.6 102 50.0
HanXRQChr14g0439351 Helianthus annuus HOM05D000578 ORTHO05D000422 1.1e-20 103.6 124 45.2
Lj3g0021140 Lotus japonicus HOM05D000578 ORTHO05D000422 1.1e-20 103.6 114 52.6
MBI07_g00481_MAGBIO Magnolia biondii HOM05D000578 ORTHO05D000422 1.1e-20 103.6 113 52.2
FAN21G3080 Fragaria x ananassa HOM05D000578 ORTHO05D000422 2.4e-20 102.4 126 46.0
arahy.Tifrunner.gnm1.ann1.Q6JUAH Arachis hypogaea HOM05D000578 ORTHO05D000422 3.1e-20 102.1 121 47.9
AUR62019649 Chenopodium quinoa HOM05D000578 ORTHO05D000422 3.1e-20 102.1 102 50.0
Manes.03G085600 Manihot esculenta HOM05D000578 ORTHO05D000422 3.1e-20 102.1 117 46.2
Aqoxy1G01904 Aquilegia oxysepala HOM05D000578 ORTHO05D000422 4.1e-20 101.7 124 48.4
DCAR_013780 Daucus carota HOM05D000578 ORTHO05D000422 4.1e-20 101.7 102 48.0
Eucgr.F01367 Eucalyptus grandis HOM05D000578 ORTHO05D000422 4.1e-20 101.7 126 45.2
Duzib213G1040 Durio zibethinus HOM05D000578 ORTHO05D000422 5.3e-20 101.3 119 47.9
Gohir.A11G289400 Gossypium hirsutum HOM05D000578 ORTHO05D000422 5.3e-20 101.3 110 46.4
Lj3g0020526 Lotus japonicus HOM05D000578 ORTHO05D000422 7.0e-20 100.9 114 51.8
MD03G1247700 Malus domestica HOM05D000578 ORTHO05D000422 7.0e-20 100.9 126 45.2
Ah.06g187680 Amaranthus hybridus HOM05D000578 ORTHO05D000422 2.0e-19 99.4 101 50.5
MD11G1269800 Malus domestica HOM05D000578 ORTHO05D000422 2.0e-19 99.4 126 44.4
Nitab4.5_0000092g0380 Nicotiana tabacum HOM05D000578 ORTHO05D000422 2.0e-19 99.4 111 50.5
TPR.G13101 Trifolium pratense HOM05D000578 ORTHO05D000422 2.7e-19 99.0 114 48.2
Ca_03930_v3 Cicer arietinum L. HOM05D000578 ORTHO05D000422 3.5e-19 98.6 120 50.0
Sc03g0010700 Simmondsia chinensis HOM05D000578 ORTHO05D000422 4.5e-19 98.2 102 52.0
TAR626G1594 Trochodendron aralioides HOM05D000578 ORTHO05D000422 5.9e-19 97.8 83 54.2
CANSAT56G3981 Cannabis sativa HOM05D000578 ORTHO05D000422 7.7e-19 97.4 126 48.4
Oeu025327.2 Olea europaea HOM05D000578 ORTHO05D000422 1.7e-18 96.3 142 43.0
Lalb_Chr20g0109141 Lupinus albus HOM05D000578 ORTHO05D000422 2.2e-18 95.9 116 50.9
Phvul.005G076700 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 3.8e-18 95.1 124 48.4
Phvul.011G168500 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 3.8e-18 95.1 125 49.6
Os05g0204600 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 6.5e-18 94.4 130 45.4
Lsat_1_v5_gn_9_100420 Lactuca sativa HOM05D000578 ORTHO05D000422 1.1e-17 93.6 130 40.0
SGA_v2.0_scaffold73G24385 Striga asiatica HOM05D000578 ORTHO05D000422 1.1e-17 93.6 129 41.1
Lj1A824G61 Lonicera japonica HOM05D000578 ORTHO05D000422 2.5e-17 92.4 132 43.9
Medtr2g073370 Medicago truncatula HOM05D000578 ORTHO05D000422 2.5e-17 92.4 121 46.3
VMungo1127G0774 Vigna mungo HOM05D000578 ORTHO05D000422 5.5e-17 91.3 127 47.2
Os01g0202500 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 7.2e-17 90.9 144 38.2
Glyma.09G099000 Glycine max HOM05D000578 ORTHO05D000422 1.6e-16 89.7 125 44.0
Oeu058457.1 Olea europaea HOM05D000578 ORTHO05D000422 2.1e-16 89.4 126 42.9
PGSC0003DMG400019025 Solanum tuberosum HOM05D000578 ORTHO05D000422 2.7e-16 89.0 125 42.4
vmacro11970 Vaccinium macrocarpon HOM05D000578 ORTHO05D000422 2.7e-16 89.0 169 34.3
Zm00001eb120740 Zea mays HOM05D000578 ORTHO05D000422 2.7e-16 89.0 110 45.5
Zm00001eb283990 Zea mays HOM05D000578 ORTHO05D000422 4.7e-16 88.2 124 41.9
MSTRG.14984 Avicennia marina HOM05D000578 ORTHO05D000422 6.1e-16 87.8 124 42.7
Lalb_Chr01g0016361 Lupinus albus HOM05D000578 ORTHO05D000422 6.1e-16 87.8 113 43.4
CSS0037476 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 8.0e-16 87.4 121 41.3
CSS0046793 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 8.0e-16 87.4 121 41.3
HPP92_009874 Vanilla planifolia HOM05D000578 ORTHO05D000422 1.0e-15 87.0 124 40.3
BcaB02g07172 Brassica carinata HOM05D000578 ORTHO05D000422 1.8e-15 86.3 117 46.2
Sabra11G0080700 Salix brachista HOM05D000578 ORTHO05D000422 1.8e-15 86.3 182 33.5
SalBow8G1065 Salvia bowleyana HOM05D000578 ORTHO05D000422 1.8e-15 86.3 105 45.7
A07p27510 Brassica napus HOM05D000578 ORTHO05D000422 3.0e-15 85.5 117 46.2
Glyma.13G265000 Glycine max HOM05D000578 ORTHO05D000422 3.0e-15 85.5 114 46.5
Oeu010030.1 Olea europaea HOM05D000578 ORTHO05D000422 4.0e-15 85.1 125 40.8
DCAR_017589 Daucus carota HOM05D000578 ORTHO05D000422 5.2e-15 84.7 101 43.6
BcaC08g47429 Brassica carinata HOM05D000578 ORTHO05D000422 6.8e-15 84.3 122 41.0
C06p30450 Brassica napus HOM05D000578 ORTHO05D000422 6.8e-15 84.3 117 46.2
A07p43870 Brassica napus HOM05D000578 ORTHO05D000422 8.8e-15 84.0 116 42.2
CAN.G594.25 Capsicum annuum HOM05D000578 ORTHO05D000422 8.8e-15 84.0 83 48.2
BcaC08g45415 Brassica carinata HOM05D000578 ORTHO05D000422 1.5e-14 83.2 117 46.2
ECA236G3912 Erigeron canadensis HOM05D000578 ORTHO05D000422 1.5e-14 83.2 122 41.8
Migut.M00693 Erythranthe guttata HOM05D000578 ORTHO05D000422 1.5e-14 83.2 122 43.4
HanXRQChr10g0305591 Helianthus annuus HOM05D000578 ORTHO05D000422 1.5e-14 83.2 123 40.7
CARHR072090 Cardamine hirsuta HOM05D000578 ORTHO05D000422 2.0e-14 82.8 122 41.8
BraA07t31894Z Brassica rapa HOM05D000578 ORTHO05D000422 3.4e-14 82.0 116 40.5
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 4.4e-14 81.6 87 48.3
Nn6g34424 Nelumbo nucifera HOM05D000578 ORTHO05D000422 4.4e-14 81.6 75 56.0
AL2G39000 Arabidopsis lyrata HOM05D000578 ORTHO05D000422 5.7e-14 81.3 115 41.7
Carub.0002s2545 Capsella rubella HOM05D000578 ORTHO05D000422 5.7e-14 81.3 116 43.1
Thhalv10018946m.g Eutrema salsugineum HOM05D000578 ORTHO05D000422 5.7e-14 81.3 117 41.9
unitig_85.g27428 Utricularia gibba HOM05D000578 ORTHO05D000422 7.5e-14 80.9 117 41.0
Solyc12g005420.2 Solanum lycopersicum HOM05D000578 ORTHO05D000422 1.7e-13 79.7 87 46.0
Zm00001eb347950 Zea mays HOM05D000578 ORTHO05D000422 2.2e-13 79.3 123 41.5
Zm00001eb376730 Zea mays HOM05D000578 ORTHO05D000422 2.2e-13 79.3 122 40.2
Lsat_1_v5_gn_5_126341 Lactuca sativa HOM05D000578 ORTHO05D000422 6.3e-13 77.8 101 43.6
SalBow8G5149 Salvia bowleyana HOM05D000578 ORTHO05D000422 1.4e-12 76.6 89 44.9
Hund10434 Selenicereus undatus HOM05D000578 ORTHO05D000422 1.4e-12 76.6 112 44.6
HanXRQChr13g0389721 Helianthus annuus HOM05D000578 ORTHO05D000422 1.8e-12 76.3 102 46.1
BcaB05g25147 Brassica carinata HOM05D000578 ORTHO05D000422 4.1e-12 75.1 105 43.8
Aa31LG4G2360 Aethionema arabicum HOM05D000578 ORTHO05D000422 5.4e-12 74.7 124 38.7
AT1G78600 Arabidopsis thaliana HOM05D000578 ORTHO05D000422 5.4e-12 74.7 115 39.1
Sp5g33690 Schrenkiella parvula HOM05D000578 ORTHO05D000422 5.4e-12 74.7 115 40.0
ATR0602G117 Amborella trichopoda HOM05D000578 ORTHO05D000422 7.0e-12 74.3 106 38.7
unitig_37.g12555 Utricularia gibba HOM05D000578 ORTHO05D000422 1.2e-11 73.6 118 39.8
Os06g0152200 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 2.0e-11 72.8 122 39.3
Sopen12g001390 Solanum pennellii HOM05D000578 ORTHO05D000422 2.0e-11 72.8 127 37.0
BolC6t40269H Brassica oleracea HOM05D000578 ORTHO05D000422 2.7e-11 72.4 131 38.2
C06p52500 Brassica napus HOM05D000578 ORTHO05D000422 5.9e-11 71.2 115 36.5
BraA07t30393Z Brassica rapa HOM05D000578 ORTHO05D000422 7.7e-11 70.9 137 38.7
Zm00001eb270930 Zea mays HOM05D000578 ORTHO05D000422 1.3e-10 70.1 132 35.6
BraA02t07231Z Brassica rapa HOM05D000578 ORTHO05D000422 5.0e-10 68.2 120 35.8
Lalb_Chr03g0031311 Lupinus albus HOM05D000578 ORTHO05D000422 2.5e-09 65.9 83 47.0
BcaC03g15826 Brassica carinata HOM05D000578 ORTHO05D000422 4.2e-09 65.1 111 36.9
A02p22250 Brassica napus HOM05D000578 ORTHO05D000422 4.2e-09 65.1 111 36.9
C02p35680 Brassica napus HOM05D000578 ORTHO05D000422 4.2e-09 65.1 111 36.9
BolC2t09588H Brassica oleracea HOM05D000578 ORTHO05D000422 4.2e-09 65.1 131 32.8


User provided reference genes

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