Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 4.6e-115 417.9 215 100.0
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 1.0e-69 267.3 258 58.5
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 1.6e-67 260.0 260 56.5
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 2.1e-67 259.6 261 56.3
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 1.4e-66 256.9 263 54.8
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 1.4e-66 256.9 256 55.1
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 2.3e-66 256.1 261 56.3
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 8.8e-66 254.2 260 55.8
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 2.6e-65 252.7 256 55.9
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 2.6e-65 252.7 260 54.2
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 3.4e-65 252.3 258 54.7
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 4.4e-65 251.9 258 55.4
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 4.4e-65 251.9 261 54.0
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 7.5e-65 251.1 258 53.9
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 1.3e-64 250.4 260 54.6
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 1.7e-64 250.0 265 52.5
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 2.2e-64 249.6 266 53.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.2e-64 249.6 269 52.8
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 2.8e-64 249.2 262 52.7
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 3.7e-64 248.8 266 52.6
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 4.9e-64 248.4 270 52.6
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 4.9e-64 248.4 270 54.8
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 6.3e-64 248.1 269 53.2
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 6.3e-64 248.1 252 56.0
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 8.3e-64 247.7 273 53.1
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 8.3e-64 247.7 266 52.3
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 1.4e-63 246.9 260 54.2
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 1.8e-63 246.5 253 54.9
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 1.8e-63 246.5 258 54.3
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 1.8e-63 246.5 256 55.5
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 1.8e-63 246.5 256 55.5
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 3.1e-63 245.7 267 55.1
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 3.1e-63 245.7 256 55.1
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 4.1e-63 245.4 270 52.2
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 4.1e-63 245.4 272 51.5
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 4.1e-63 245.4 272 51.5
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 4.1e-63 245.4 272 51.5
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 4.1e-63 245.4 271 51.7
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 5.4e-63 245.0 256 55.1
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 5.4e-63 245.0 261 53.3
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 7.0e-63 244.6 266 54.1
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 7.0e-63 244.6 261 52.9
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 1.6e-62 243.4 271 52.4
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 1.6e-62 243.4 256 53.1
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 2.0e-62 243.0 271 51.3
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 2.0e-62 243.0 271 51.3
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 2.0e-62 243.0 253 54.5
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 2.0e-62 243.0 261 53.3
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 2.0e-62 243.0 263 52.9
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 3.5e-62 242.3 258 55.4
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 3.5e-62 242.3 258 55.4
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 3.5e-62 242.3 256 55.5
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 3.5e-62 242.3 258 54.7
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 4.5e-62 241.9 271 52.0
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 4.5e-62 241.9 256 53.9
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 5.9e-62 241.5 273 52.0
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 5.9e-62 241.5 273 52.0
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 1.0e-61 240.7 275 52.0
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 1.0e-61 240.7 252 54.0
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 1.0e-61 240.7 258 55.4
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 3.8e-61 238.8 261 54.0
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 5.0e-61 238.4 252 55.6
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 5.0e-61 238.4 253 53.4
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 6.6e-61 238.0 258 54.7
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 6.6e-61 238.0 252 54.8
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 6.6e-61 238.0 259 50.2
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 6.6e-61 238.0 266 50.8
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 8.6e-61 237.7 267 52.4
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 8.6e-61 237.7 255 53.3
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 8.6e-61 237.7 261 51.3
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 1.1e-60 237.3 261 51.7
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 1.1e-60 237.3 256 52.7
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 1.1e-60 237.3 256 55.1
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 1.5e-60 236.9 253 53.0
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 1.9e-60 236.5 252 55.2
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 2.5e-60 236.1 258 53.9
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 4.3e-60 235.3 258 53.9
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 4.3e-60 235.3 258 53.1
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 4.3e-60 235.3 258 53.1
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 7.3e-60 234.6 257 51.0
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 1.2e-59 233.8 258 52.7
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 1.2e-59 233.8 258 53.1
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 1.2e-59 233.8 267 49.4
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 2.8e-59 232.6 256 52.3
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.8e-59 232.6 253 54.5
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 3.6e-59 232.3 265 51.3
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 6.1e-59 231.5 263 51.3
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 8.0e-59 231.1 258 51.9
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 2.3e-58 229.6 256 52.7
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 3.0e-58 229.2 252 53.2
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 4.0e-58 228.8 258 51.6
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 4.0e-58 228.8 258 51.6
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 4.0e-58 228.8 258 51.9
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 6.8e-58 228.0 257 51.8
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 4.4e-57 225.3 258 48.8
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 5.7e-57 224.9 263 52.5
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 7.5e-57 224.6 257 52.5
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.4e-55 219.5 257 50.6
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 1.2e-54 217.2 240 50.8
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 3.5e-54 215.7 234 51.7
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 2.3e-53 213.0 232 52.2
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 3.9e-53 212.2 254 49.2
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 7.3e-52 208.0 260 48.5
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 7.3e-52 208.0 245 49.4
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 1.6e-51 206.8 230 52.6
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 1.4e-50 203.8 257 47.9
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 5.2e-50 201.8 152 67.8
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 6.8e-50 201.4 250 48.8
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 1.2e-49 200.7 233 49.4
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 1.5e-49 200.3 232 49.6
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 1.7e-48 196.8 228 50.4
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 1.1e-47 194.1 156 63.5
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 5.4e-47 191.8 233 49.8
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 2.7e-46 189.5 255 47.5
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 2.7e-46 189.5 258 46.5
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 3.5e-46 189.1 243 47.3
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 4.6e-46 188.7 251 45.0
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 4.3e-44 182.2 147 60.5
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 2.1e-43 179.9 251 45.8
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 6.2e-43 178.3 129 65.1
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 2.0e-41 173.3 262 40.8
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 2.7e-38 162.9 116 69.8
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 2.7e-38 162.9 116 69.8
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 1.6e-35 153.7 115 67.0
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 2.4e-31 139.8 172 44.2
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 5.4e-31 138.7 179 46.9
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 6.6e-29 131.7 115 60.9
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 1.1e-23 114.4 208 38.5
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 3.2e-15 86.3 155 38.7
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 1.7e-08 63.9 62 61.3


User provided reference genes

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