Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 3.7e-97 358.6 239 100.0
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.3e-62 243.8 239 77.4
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 6.6e-62 241.5 237 77.6
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 6.6e-62 241.5 237 77.6
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 8.6e-62 241.1 237 77.2
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 3.3e-61 239.2 237 77.2
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 9.5e-61 237.7 237 76.4
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 6.2e-60 235.0 236 77.5
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 8.1e-60 234.6 233 76.8
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.4e-59 233.8 254 71.3
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 3.1e-59 232.6 241 75.1
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 4.0e-59 232.3 237 76.8
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 6.8e-59 231.5 236 75.4
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 8.9e-59 231.1 213 83.1
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.2e-58 230.7 239 75.3
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 2.0e-58 229.9 205 84.9
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 2.6e-58 229.6 205 84.9
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 3.4e-58 229.2 229 78.2
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 4.4e-58 228.8 205 83.9
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.5e-58 228.0 219 79.9
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 7.5e-58 228.0 225 77.8
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.3e-57 227.3 233 77.7
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.7e-57 226.9 241 75.1
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.2e-57 226.5 194 88.7
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-57 226.1 191 89.0
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 4.9e-57 225.3 229 66.4
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.4e-56 223.8 237 72.6
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.9e-56 223.4 197 86.8
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 2.4e-56 223.0 230 77.4
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 3.2e-56 222.6 214 79.9
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 3.2e-56 222.6 219 78.5
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 3.2e-56 222.6 240 73.8
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 4.1e-56 222.2 238 74.8
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 5.4e-56 221.9 230 77.0
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.2e-55 220.7 191 88.0
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.2e-55 220.7 211 78.7
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.7e-55 219.5 239 72.8
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.7e-55 219.5 239 72.4
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 2.7e-55 219.5 235 73.6
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 4.6e-55 218.8 191 86.4
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.8e-55 218.0 191 60.7
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 7.8e-55 218.0 196 84.7
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 1.0e-54 217.6 210 79.5
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.7e-54 216.9 226 76.1
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.3e-54 216.5 183 88.5
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 5.1e-54 215.3 239 70.7
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 6.6e-54 214.9 230 75.7
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.1e-53 214.2 238 73.9
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.1e-53 214.2 238 73.9
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.9e-53 213.4 240 72.1
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.9e-53 213.4 242 72.3
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.9e-53 213.4 214 66.4
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 3.3e-53 212.6 240 71.2
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 4.3e-53 212.2 237 73.4
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 5.6e-53 211.8 205 81.5
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 5.6e-53 211.8 224 75.4
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 7.3e-53 211.5 185 87.6
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 9.5e-53 211.1 237 73.0
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 9.5e-53 211.1 205 80.5
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 9.5e-53 211.1 211 78.2
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 2.1e-52 209.9 188 86.7
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.1e-52 209.9 227 74.0
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.8e-52 209.5 204 78.9
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.6e-52 209.1 184 87.5
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.6e-52 209.1 184 87.5
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.7e-52 208.8 191 69.1
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.1e-51 207.6 189 85.2
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.1e-51 207.6 184 87.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-51 207.6 183 86.3
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-51 207.2 185 87.0
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.8e-51 206.8 239 71.1
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 2.4e-51 206.5 234 73.1
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 6.8e-51 204.9 185 85.9
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 6.8e-51 204.9 185 86.5
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.2e-50 204.1 242 70.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.2e-50 204.1 179 88.3
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.5e-50 203.8 188 85.6
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.4e-50 202.2 187 86.1
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 4.4e-50 202.2 189 83.1
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 7.6e-50 201.4 213 75.1
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 9.9e-50 201.1 232 72.0
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 9.9e-50 201.1 240 69.6
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-49 200.7 193 57.5
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.7e-49 200.3 214 75.7
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 4.9e-49 198.7 201 77.1
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 4.1e-48 195.7 236 59.7
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 4.1e-48 195.7 147 69.4
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.2e-47 194.1 236 68.2
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.2e-47 194.1 192 80.2
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.7e-47 193.0 182 84.6
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.3e-46 190.7 240 68.8
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.3e-46 190.7 184 83.7
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.3e-46 190.7 192 79.2
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.3e-46 190.7 192 79.2
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 1.7e-46 190.3 198 77.3
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 2.3e-46 189.9 191 79.6
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 2.3e-46 189.9 191 79.6
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 5.1e-46 188.7 239 66.9
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 5.1e-46 188.7 140 67.9
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 1.5e-45 187.2 238 68.5
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 2.5e-45 186.4 184 82.1
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.3e-45 186.0 126 74.6
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.3e-45 186.0 126 74.6
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.3e-45 186.0 126 74.6
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-44 183.7 126 73.8
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 2.1e-44 183.3 191 78.0
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-44 183.3 126 71.4
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-44 182.6 239 66.9
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 3.6e-44 182.6 239 67.4
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.2e-44 181.8 126 73.0
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.2e-43 178.7 126 73.0
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.0e-43 177.9 209 49.3
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.0e-43 177.9 209 49.3
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-42 177.6 186 57.5
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.5e-42 177.2 105 80.0
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 8.4e-41 171.4 193 73.1
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.4e-40 170.6 157 90.4
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.9e-40 170.2 184 77.2
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.4e-40 169.9 158 88.6
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 9.3e-40 167.9 166 84.3
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-39 167.5 186 56.5
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.4e-35 153.3 235 65.1
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.6e-34 148.3 77 92.2
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 2.2e-33 146.7 156 80.8
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 2.9e-33 146.4 123 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 4.9e-33 145.6 108 64.8
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.1e-32 144.4 208 60.1
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.5e-21 106.7 64 78.1
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 1.9e-13 80.5 179 41.9
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.4e-13 78.6 116 78.4


User provided reference genes

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