Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.4e-217 756.9 378 100.0
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-172 610.1 364 86.3
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.7e-160 568.5 342 86.3
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.0e-149 532.3 472 63.1
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 7.8e-142 507.7 395 67.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.4e-138 496.9 387 67.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.3e-138 496.1 395 66.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 6.8e-138 494.6 352 71.6
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 6.8e-138 494.6 352 71.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.6e-137 492.7 389 67.6
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 3.4e-137 492.3 386 66.8
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 5.8e-137 491.5 395 66.6
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.8e-137 491.5 383 67.6
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.7e-136 490.0 394 66.5
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.1e-135 487.3 409 63.1
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.4e-135 486.1 427 62.5
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.1e-135 485.3 402 64.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 9.2e-135 484.2 388 66.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.6e-134 483.4 386 66.3
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.6e-134 483.4 344 71.2
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.1e-134 483.0 416 63.0
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.6e-134 481.9 395 65.1
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 7.8e-134 481.1 410 63.2
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.0e-133 480.7 411 63.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.0e-133 480.7 437 60.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.7e-133 479.9 385 65.7
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.7e-133 479.9 427 60.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 3.0e-133 479.2 382 66.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.9e-133 478.8 390 65.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 3.9e-133 478.8 335 71.6
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 5.1e-133 478.4 401 61.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 5.1e-133 478.4 397 63.7
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 8.6e-133 477.6 395 65.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 8.6e-133 477.6 425 62.4
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.1e-132 477.2 395 64.8
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.5e-132 476.9 410 62.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.5e-132 476.9 367 68.1
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-132 476.5 408 62.3
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.9e-132 476.5 377 64.7
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-132 476.5 335 71.0
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.5e-132 476.1 382 63.9
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.3e-132 475.3 353 69.4
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.3e-132 475.3 401 61.8
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 4.3e-132 475.3 397 63.0
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.6e-132 474.9 385 65.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.3e-132 474.6 403 61.5
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 7.3e-132 474.6 401 61.6
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 9.6e-132 474.2 403 61.5
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.6e-132 474.2 410 63.2
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.6e-131 473.4 395 64.6
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.6e-131 473.4 384 65.1
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.6e-131 473.4 395 63.5
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.6e-131 473.4 394 62.9
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.1e-131 473.0 395 63.3
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.8e-131 472.6 412 62.6
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.6e-131 472.2 371 65.0
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 4.7e-131 471.9 395 63.3
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 6.2e-131 471.5 332 72.3
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 8.1e-131 471.1 375 66.4
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 8.1e-131 471.1 400 63.2
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.1e-130 470.7 399 62.4
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-130 470.7 403 61.3
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.4e-130 470.3 337 69.7
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-130 469.9 435 57.9
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.8e-130 469.9 414 62.3
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 2.4e-130 469.5 387 64.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 3.1e-130 469.2 402 63.4
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.1e-130 469.2 422 59.0
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 3.1e-130 469.2 354 67.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 4.0e-130 468.8 393 62.6
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 6.9e-130 468.0 401 62.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 8.9e-130 467.6 395 63.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.2e-129 467.2 333 71.8
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.2e-129 467.2 383 65.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.5e-129 466.8 395 63.8
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.5e-129 466.8 395 63.0
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.5e-129 466.8 337 70.0
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.5e-129 466.8 340 70.0
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.5e-129 466.8 337 69.1
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.0e-129 466.5 387 63.6
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.6e-129 466.1 395 63.0
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.4e-129 465.7 398 63.3
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 5.8e-129 464.9 395 62.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 5.8e-129 464.9 418 60.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 7.6e-129 464.5 394 62.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 9.9e-129 464.2 358 68.7
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.3e-128 463.8 406 62.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.7e-128 463.4 394 62.4
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-128 463.4 395 62.8
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.7e-128 463.4 390 63.3
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.2e-128 463.0 384 64.1
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.8e-128 462.2 395 62.5
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.8e-128 462.2 395 62.5
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.8e-128 462.2 395 62.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.8e-128 462.2 395 62.5
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.9e-128 461.8 458 57.0
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 8.4e-128 461.1 391 63.2
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 8.4e-128 461.1 401 60.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.4e-127 460.3 356 66.9
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.4e-127 460.3 423 60.0
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 2.4e-127 459.5 401 62.6
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.2e-127 459.1 369 65.9
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 4.2e-127 458.8 332 69.0
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 5.4e-127 458.4 388 62.9
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.1e-126 456.4 396 62.4
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 6.0e-126 454.9 394 61.2
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.1e-125 451.8 391 61.9
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.1e-124 450.7 400 61.2
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 4.3e-124 448.7 334 71.0
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.1e-123 446.4 345 65.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 3.6e-123 445.7 338 70.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 8.1e-123 444.5 414 58.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.1e-122 444.1 332 67.2
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-122 444.1 360 66.7
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.0e-122 442.2 233 89.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.8e-121 438.3 386 61.9
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.2e-120 436.4 405 60.0
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 4.9e-120 435.3 481 53.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 4.2e-119 432.2 233 88.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.3e-119 431.0 435 55.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.1e-118 429.9 233 86.7
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.0e-117 427.6 408 57.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-117 427.2 373 61.9
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.9e-114 414.8 389 58.6
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.7e-112 410.2 397 57.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.4e-111 406.4 331 62.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 7.1e-111 404.8 371 60.6
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.1e-110 403.3 384 59.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 7.9e-110 401.4 421 52.7
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.9e-108 396.7 299 67.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.8e-107 392.9 334 62.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 4.0e-106 389.0 321 62.3
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.6e-105 386.3 404 54.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 4.5e-105 385.6 413 56.9
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.3e-104 384.0 438 50.7
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-103 380.9 268 75.0
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 4.2e-103 379.0 333 60.1
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.7e-100 368.6 388 55.7
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 3.7e-99 365.9 227 73.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.3e-99 365.2 329 59.9
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.0e-85 319.7 456 46.3
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 6.7e-85 318.5 327 52.9
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.2e-83 313.5 238 64.3
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.7e-78 295.8 167 85.6
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.4e-69 267.7 281 54.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.2e-57 228.0 158 68.4
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.0e-44 184.1 265 40.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 8.0e-38 162.2 313 39.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.8e-37 161.0 120 69.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.2e-30 136.0 81 81.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.1e-15 88.6 357 28.9
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.7e-08 64.7 56 60.7
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-07 62.0 110 38.2
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.6e-06 57.0 95 37.9


User provided reference genes

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