Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.4e-224 780.0 390 100.0
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.6e-182 641.7 396 86.6
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.0e-172 609.4 364 86.3
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 9.9e-132 474.2 453 59.4
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.7e-131 473.4 447 60.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.4e-130 469.5 474 57.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 4.1e-130 468.8 452 59.3
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 7.1e-130 468.0 452 58.8
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 9.2e-130 467.6 450 58.2
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.7e-128 463.4 441 58.5
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.3e-128 463.0 449 58.8
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.0e-128 462.6 452 58.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 6.6e-128 461.5 442 60.0
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 6.6e-128 461.5 442 60.0
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.1e-127 460.7 448 58.7
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.1e-127 460.7 448 58.0
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 4.3e-127 458.8 424 59.7
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.6e-127 458.4 451 58.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 7.3e-127 458.0 439 58.1
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.2e-126 457.2 452 58.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.2e-126 457.2 446 58.5
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.6e-126 456.8 449 58.6
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.1e-126 456.4 439 58.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.1e-126 456.4 446 59.4
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.6e-126 455.7 442 58.8
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.1e-125 454.1 445 58.4
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.4e-125 453.8 439 59.0
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.8e-125 453.4 426 59.6
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 5.2e-125 451.8 442 57.9
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.2e-124 450.7 460 56.7
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.2e-124 450.7 449 57.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.5e-124 450.3 451 57.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.5e-124 450.3 436 58.0
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 2.0e-124 449.9 436 59.6
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.6e-124 449.5 438 59.1
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.4e-124 449.1 448 57.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 4.4e-124 448.7 424 57.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 9.9e-124 447.6 448 57.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.7e-123 446.8 443 57.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.2e-123 446.4 461 57.0
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.2e-123 446.4 444 57.0
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 4.9e-123 445.3 444 57.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.9e-123 445.3 424 57.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 8.4e-123 444.5 447 56.8
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.1e-122 444.1 450 56.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-122 443.7 451 54.5
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.4e-122 443.7 466 54.9
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.4e-122 443.7 450 56.7
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.4e-122 443.0 453 55.8
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.2e-122 442.6 466 56.7
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 4.2e-122 442.2 444 56.3
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 7.1e-122 441.4 438 58.4
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-121 440.7 440 56.4
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.6e-121 440.3 438 57.5
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.1e-121 439.9 436 57.6
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.7e-121 439.5 413 58.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 3.5e-121 439.1 444 57.7
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 7.8e-121 438.0 434 58.3
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.7e-120 436.8 441 57.1
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.7e-120 436.8 441 57.4
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.3e-120 436.4 443 57.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 3.0e-120 436.0 451 55.7
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.9e-120 435.6 454 55.5
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.9e-120 435.6 444 55.6
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 5.1e-120 435.3 470 53.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 5.1e-120 435.3 461 54.2
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.1e-120 435.3 458 55.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 6.6e-120 434.9 441 56.7
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 6.6e-120 434.9 441 56.7
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 8.7e-120 434.5 431 57.5
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-119 433.7 319 71.5
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.5e-119 433.7 432 58.1
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.9e-119 433.3 446 56.3
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.9e-119 433.3 480 55.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.3e-119 432.6 442 57.5
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 3.3e-119 432.6 491 53.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.6e-119 431.8 427 55.3
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 5.6e-119 431.8 435 57.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 7.3e-119 431.4 444 56.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-118 430.6 440 54.1
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.1e-118 429.9 498 52.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.6e-118 429.1 453 54.7
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 4.8e-118 428.7 431 56.6
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.8e-117 426.8 442 55.2
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.1e-117 426.0 451 54.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 5.3e-117 425.2 443 55.8
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 5.3e-117 425.2 436 56.9
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 6.9e-117 424.9 445 54.8
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 9.0e-117 424.5 448 55.4
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.6e-116 422.9 439 55.4
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.6e-116 422.9 438 55.7
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 5.8e-116 421.8 442 56.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 5.8e-116 421.8 434 56.2
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 2.2e-115 419.9 372 62.1
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.9e-115 419.5 447 55.3
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.8e-115 419.1 437 56.3
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 8.4e-115 417.9 436 55.7
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.4e-114 416.4 493 51.9
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 3.2e-114 416.0 429 57.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.6e-113 413.7 374 61.5
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 2.7e-113 412.9 387 59.9
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 2.7e-113 412.9 332 66.0
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 4.6e-113 412.1 498 50.6
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 4.6e-113 412.1 363 61.7
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 7.9e-113 411.4 450 52.9
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.7e-112 410.2 361 60.1
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.1e-112 408.7 414 56.5
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 8.7e-112 407.9 440 53.6
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 8.7e-112 407.9 434 54.4
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 9.6e-111 404.4 426 55.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.8e-110 402.9 453 53.2
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.4e-109 399.8 312 66.7
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 9.0e-109 397.9 489 50.5
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.8e-108 395.2 436 53.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.1e-106 391.0 429 55.5
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.4e-106 389.8 441 52.2
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.4e-106 389.8 414 55.3
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.2e-105 387.5 451 51.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 5.1e-104 382.1 418 54.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 6.7e-104 381.7 467 49.5
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 8.7e-104 381.3 398 55.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.1e-103 380.9 428 55.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 3.3e-103 379.4 426 51.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 5.6e-103 378.6 429 52.9
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 9.6e-103 377.9 428 55.6
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.2e-100 370.9 292 65.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.4e-98 364.0 436 47.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.9e-98 363.6 451 49.9
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.5e-98 363.2 373 54.4
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 3.0e-96 356.3 484 48.8
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 6.7e-96 355.1 258 69.0
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 4.3e-95 352.4 264 68.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-94 350.1 271 70.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.0e-92 343.6 480 46.2
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.3e-91 340.9 315 56.8
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.3e-88 330.9 438 45.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.2e-86 323.6 306 55.6
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.3e-83 314.3 425 48.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.0e-80 304.7 255 59.2
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.0e-80 303.1 376 49.7
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.2e-76 291.2 361 48.5
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.6e-76 290.0 528 41.7
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.4e-64 251.1 313 47.0
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.5e-59 231.9 399 39.8
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.8e-45 187.6 406 38.2
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 5.9e-44 182.6 261 42.5
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.5e-42 177.2 364 38.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 6.4e-30 136.0 362 29.3
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 6.2e-25 119.4 218 41.7
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.8e-24 117.9 72 77.8
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.2e-22 110.9 117 53.0
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.6e-20 104.8 132 49.2
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.1e-17 94.4 175 38.9
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-14 85.1 174 40.2
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.1e-13 82.0 119 41.2
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.4e-13 81.6 127 38.6
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.3e-11 74.3 119 38.7
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-07 61.6 110 38.2


User provided reference genes

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