Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 7.7e-239 830.1 424 100.0
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 9.9e-194 680.2 446 81.6
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 7.8e-175 617.5 422 71.8
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.6e-170 602.4 422 69.9
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 4.5e-170 601.7 422 69.4
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 5.4e-168 594.7 420 69.8
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.1e-167 592.8 422 69.4
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.0e-166 590.5 422 69.2
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 3.9e-166 588.6 422 69.9
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.8e-164 582.4 422 68.5
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.2e-164 581.3 422 67.1
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.0e-163 578.6 422 66.6
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 9.0e-163 577.4 422 67.8
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.0e-162 576.2 422 67.3
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.4e-162 575.5 422 68.5
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 5.8e-162 574.7 421 68.6
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 7.6e-162 574.3 423 66.4
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 7.6e-162 574.3 422 65.6
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.9e-161 572.4 425 66.8
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 3.8e-161 572.0 422 67.5
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.8e-161 572.0 422 67.1
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.8e-161 572.0 425 66.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.9e-161 571.6 425 67.5
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.4e-161 571.2 422 68.0
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 8.4e-161 570.9 422 66.4
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.4e-161 570.9 422 67.8
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 8.4e-161 570.9 425 66.6
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-160 570.5 422 67.5
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.1e-160 570.5 419 67.1
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.4e-160 570.1 422 67.3
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.4e-160 569.3 422 67.1
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.2e-159 567.0 423 66.2
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 6.0e-159 564.7 422 67.1
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 6.0e-159 564.7 422 67.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.0e-158 563.9 422 65.9
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-158 563.5 422 66.1
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 3.9e-158 562.0 422 66.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.1e-157 560.5 426 66.2
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.5e-157 560.1 421 65.3
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.3e-157 558.5 424 65.6
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 4.3e-157 558.5 422 66.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.6e-157 558.1 422 66.1
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 7.4e-157 557.8 423 66.2
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 9.6e-157 557.4 423 66.2
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 9.6e-157 557.4 422 65.9
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.3e-156 557.0 422 64.9
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.6e-156 556.6 422 64.5
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.8e-156 555.8 422 65.9
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.8e-156 555.8 420 66.0
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.8e-156 555.8 420 66.2
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.7e-156 555.4 422 64.9
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.8e-156 555.1 419 65.4
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.2e-156 554.7 429 64.8
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.4e-155 552.7 419 64.9
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 3.1e-155 552.4 424 66.3
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 9.0e-155 550.8 426 63.6
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 2.0e-154 549.7 419 64.7
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 2.0e-154 549.7 422 64.5
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 3.4e-154 548.9 425 63.8
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 7.6e-154 547.7 422 65.6
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.6e-154 547.7 424 66.7
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.7e-153 546.6 431 64.3
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.2e-152 542.0 422 65.4
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.7e-151 539.3 425 63.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 7.9e-151 537.7 423 63.4
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.8e-150 536.6 402 65.2
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 6.7e-150 534.6 422 64.2
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 3.3e-149 532.3 421 64.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 4.3e-149 531.9 360 71.7
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.3e-149 531.9 424 63.4
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.6e-148 530.0 456 60.7
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.6e-148 530.0 455 61.5
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.6e-148 530.0 424 63.2
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.7e-148 528.9 461 59.4
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.4e-147 526.2 423 63.6
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.4e-147 526.2 426 62.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 4.1e-147 525.4 420 63.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 5.3e-147 525.0 419 63.7
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 9.0e-147 524.2 426 64.1
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.2e-146 523.9 424 62.5
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.5e-146 523.5 426 61.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 3.4e-146 522.3 421 61.3
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 7.6e-146 521.2 425 61.4
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.0e-145 520.8 425 61.2
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.6e-143 513.5 422 62.3
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.6e-143 511.9 431 62.9
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 4.6e-143 511.9 424 61.3
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.1e-141 507.3 426 62.2
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.5e-141 506.1 426 63.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.3e-140 503.8 426 61.7
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 3.7e-140 502.3 427 61.4
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 6.3e-140 501.5 423 60.5
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 8.2e-140 501.1 426 60.1
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.1e-139 500.7 423 61.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-139 500.4 427 61.1
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.4e-139 500.4 423 60.3
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.4e-139 499.6 424 61.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.4e-139 499.6 425 60.7
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 7.7e-138 494.6 423 59.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.3e-137 493.8 426 59.2
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.7e-137 493.4 423 57.7
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 2.9e-137 492.7 383 65.0
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.1e-136 490.7 426 60.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.1e-136 490.7 426 58.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.5e-136 489.6 421 59.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.4e-136 487.6 422 60.0
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.6e-135 486.9 426 61.0
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.7e-135 486.1 427 60.2
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.6e-135 485.7 426 60.1
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 3.9e-134 482.3 423 59.8
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 3.9e-134 482.3 423 59.8
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 6.7e-134 481.5 423 59.3
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.6e-133 479.6 423 59.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 4.4e-133 478.8 423 59.3
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.7e-132 476.9 422 60.4
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.2e-132 476.5 421 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.7e-132 475.7 450 56.0
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 4.1e-131 472.2 426 58.2
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-130 469.9 426 57.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.6e-130 469.5 426 58.0
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 5.0e-129 465.3 381 62.7
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.6e-127 459.1 321 70.7
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.6e-125 453.0 308 72.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.6e-125 453.0 436 56.0
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 4.1e-123 445.7 385 61.8
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 2.9e-121 439.5 435 53.6
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.2e-111 407.5 396 57.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 6.1e-111 405.2 387 55.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.5e-101 374.0 284 65.5
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 2.0e-101 373.6 333 58.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.4e-94 350.9 238 74.8
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.5e-93 347.4 239 72.8
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 9.2e-91 338.2 422 46.4
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.4e-83 313.5 356 49.7
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.7e-81 307.4 355 49.6
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 5.8e-69 265.8 429 37.5
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 2.8e-63 246.9 352 38.4
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.8e-60 236.5 322 45.7
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.5e-56 223.8 212 56.1
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.3e-55 221.5 190 62.1
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 6.4e-52 209.1 373 39.9
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 5.4e-51 206.1 141 70.2
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.5e-48 197.2 191 58.1
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.8e-46 191.0 305 42.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 3.5e-42 176.8 333 33.9
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 4.6e-42 176.4 191 52.9
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.1e-35 155.2 251 39.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 3.9e-25 120.2 105 63.8
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.5e-24 118.2 122 48.4
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.5e-24 117.5 180 40.0
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 4.5e-21 106.7 125 41.6
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 6.5e-20 102.8 76 71.1
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 3.2e-19 100.5 75 65.3
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 3.2e-19 100.5 75 65.3
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 4.8e-15 86.7 326 24.2
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.2e-10 72.0 62 54.8
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 4.7e-10 70.1 53 73.6
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.8e-09 68.2 203 27.6
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.8e-09 68.2 59 55.9
SGA_v2.0_scaffold80G25836 Striga asiatica HOM05D002716 ORTHO05D003324 1.8e-09 68.2 204 26.0
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 3.0e-09 67.4 203 27.1
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 5.2e-09 66.6 203 27.1
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 6.7e-09 66.2 211 24.6
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 6.7e-09 66.2 211 24.6
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 6.7e-09 66.2 211 24.6
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 6.7e-09 66.2 211 24.6
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 6.7e-09 66.2 211 24.6
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 6.7e-09 66.2 202 25.7
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 6.7e-09 66.2 211 25.1
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 8.8e-09 65.9 202 25.2
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 1.5e-08 65.1 202 25.2
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.5e-08 65.1 202 25.2
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.0e-08 64.7 202 25.2
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.0e-08 64.7 202 25.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 2.6e-08 64.3 202 25.2
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 2.6e-08 64.3 202 25.2
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.7e-08 63.2 119 35.3
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.4e-08 62.8 133 33.8
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 9.7e-08 62.4 186 25.3
SMO115G0004 Selaginella moellendorffii HOM05D002716 ORTHO05D003324 9.7e-08 62.4 191 25.7
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 2.2e-07 61.2 202 25.2
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 2.2e-07 61.2 202 25.2
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 2.2e-07 61.2 202 25.2


User provided reference genes

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