Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0544 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 6.4e-34 146.7 69 100.0
CDE02G1209 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.4e-09 65.9 36 80.6
LjContig00435g0005269 Lotus japonicus HOM05D001977 ORTHO05D002246 1.4e-09 65.9 68 47.1
GSVIVG01005024001 Vitis vinifera HOM05D001977 ORTHO05D002246 1.9e-09 65.5 65 47.7
Lj5g0026880 Lotus japonicus HOM05D001977 ORTHO05D002246 3.2e-09 64.7 68 47.1
Dinv20857 Davidia involucrata HOM05D001977 ORTHO05D002246 5.4e-09 63.9 61 52.5
TPR.G39986 Trifolium pratense HOM05D001977 ORTHO05D002246 9.3e-09 63.2 52 55.8
ATR0661G502 Amborella trichopoda HOM05D001977 ORTHO05D002246 1.2e-08 62.8 36 72.2
ATR0105G029 Amborella trichopoda HOM05D001977 ORTHO05D002246 1.6e-08 62.4 36 69.4
Glyma.10G200000 Glycine max HOM05D001977 ORTHO05D002246 1.6e-08 62.4 40 62.5
Psat6g174080 Pisum sativum HOM05D001977 ORTHO05D002246 1.6e-08 62.4 52 55.8
vmacro10265 Vaccinium macrocarpon HOM05D001977 ORTHO05D002246 2.1e-08 62.0 61 52.5
Glyma.20G190500 Glycine max HOM05D001977 ORTHO05D002246 2.7e-08 61.6 40 62.5
Lalb_Chr02g0151191 Lupinus albus HOM05D001977 ORTHO05D002246 2.7e-08 61.6 39 64.1
MD02G1241600 Malus domestica HOM05D001977 ORTHO05D002246 2.7e-08 61.6 40 65.0
TAR623G0581 Trochodendron aralioides HOM05D001977 ORTHO05D002246 2.7e-08 61.6 36 69.4
Actinidia38895 Actinidia chinensis HOM05D001977 ORTHO05D002246 3.5e-08 61.2 36 72.2
Cfa001769 Carpinus fangiana HOM05D001977 ORTHO05D002246 3.5e-08 61.2 52 55.8
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 3.5e-08 61.2 40 60.0
FAN03G2995 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.5e-08 61.2 52 55.8
Zm00001eb392000 Zea mays HOM05D001977 ORTHO05D002246 3.5e-08 61.2 56 46.4
Actinidia34785 Actinidia chinensis HOM05D001977 ORTHO05D002246 4.6e-08 60.8 36 72.2
Aa31LG11G5350 Aethionema arabicum HOM05D001977 ORTHO05D002246 4.6e-08 60.8 68 42.6
FAN01G0828 Fragaria x ananassa HOM05D001977 ORTHO05D002246 4.6e-08 60.8 52 53.8
FAN06G3150 Fragaria x ananassa HOM05D001977 ORTHO05D002246 4.6e-08 60.8 52 53.8
Nn6g35168 Nelumbo nucifera HOM05D001977 ORTHO05D002246 4.6e-08 60.8 41 63.4
Rhsim09G0144800 Rhododendron simsii HOM05D001977 ORTHO05D002246 4.6e-08 60.8 68 48.5
Carub.0006s0341 Capsella rubella HOM05D001977 ORTHO05D002246 6.0e-08 60.5 68 47.1
AUR62002711 Chenopodium quinoa HOM05D001977 ORTHO05D002246 6.0e-08 60.5 36 69.4
Ciclev10030581m.g Citrus clementina HOM05D001977 ORTHO05D002246 6.0e-08 60.5 36 69.4
Lalb_Chr06g0170061 Lupinus albus HOM05D001977 ORTHO05D002246 6.0e-08 60.5 39 61.5
Medtr1g090860 Medicago truncatula HOM05D001977 ORTHO05D002246 6.0e-08 60.5 52 53.8
CANSAT56G0646 Cannabis sativa HOM05D001977 ORTHO05D002246 7.9e-08 60.1 58 53.4
Eucgr.G02730 Eucalyptus grandis HOM05D001977 ORTHO05D002246 7.9e-08 60.1 41 63.4
MSTRG.8116 Avicennia marina HOM05D001977 ORTHO05D002246 1.0e-07 59.7 41 63.4
BcaC06g32157 Brassica carinata HOM05D001977 ORTHO05D002246 1.0e-07 59.7 37 62.2
A10p31610 Brassica napus HOM05D001977 ORTHO05D002246 1.0e-07 59.7 37 62.2
C09p72280 Brassica napus HOM05D001977 ORTHO05D002246 1.0e-07 59.7 37 62.2
BolC2t06152H Brassica oleracea HOM05D001977 ORTHO05D002246 1.0e-07 59.7 55 49.1
BolC9t59972H Brassica oleracea HOM05D001977 ORTHO05D002246 1.0e-07 59.7 37 62.2
BraA10t45207Z Brassica rapa HOM05D001977 ORTHO05D002246 1.0e-07 59.7 37 62.2
Lj2C25G10 Lonicera japonica HOM05D001977 ORTHO05D002246 1.0e-07 59.7 29 79.3
Potri.008G029400 Populus trichocarpa HOM05D001977 ORTHO05D002246 1.0e-07 59.7 36 66.7
BcaC03g12947 Brassica carinata HOM05D001977 ORTHO05D002246 1.3e-07 59.3 55 49.1
C02p01950 Brassica napus HOM05D001977 ORTHO05D002246 1.3e-07 59.3 55 49.1
ClCG08G007970 Citrullus lanatus HOM05D001977 ORTHO05D002246 1.3e-07 59.3 36 66.7
Haze_16787 Corylus avellana HOM05D001977 ORTHO05D002246 1.3e-07 59.3 36 66.7
Phvul.007G141200 Phaseolus vulgaris HOM05D001977 ORTHO05D002246 1.3e-07 59.3 36 63.9
Prupe.2G095400 Prunus persica HOM05D001977 ORTHO05D002246 1.3e-07 59.3 52 51.9
SEGI_29760 Sequoiadendron giganteum HOM05D001977 ORTHO05D002246 1.3e-07 59.3 36 63.9
AL6G14110 Arabidopsis lyrata HOM05D001977 ORTHO05D002246 1.8e-07 58.9 68 44.1
AT5G04480 Arabidopsis thaliana HOM05D001977 ORTHO05D002246 1.8e-07 58.9 68 44.1
CSS0035481 Camellia sinensis var. sinensis HOM05D001977 ORTHO05D002246 1.8e-07 58.9 68 47.1
CiPaw.01G264500 Carya illinoinensis HOM05D001977 ORTHO05D002246 1.8e-07 58.9 50 50.0
Nn2g13906 Nelumbo nucifera HOM05D001977 ORTHO05D002246 1.8e-07 58.9 49 53.1
Oeu060291.1 Olea europaea HOM05D001977 ORTHO05D002246 1.8e-07 58.9 29 75.9
Sp6g38270 Schrenkiella parvula HOM05D001977 ORTHO05D002246 1.8e-07 58.9 37 62.2
TWI38G1322 Tripterygium wilfordii HOM05D001977 ORTHO05D002246 1.8e-07 58.9 52 51.9
Atru.chr12.922 Acer truncatum HOM05D001977 ORTHO05D002246 2.3e-07 58.5 52 53.8
EL10Ac8g19652 Beta vulgaris HOM05D001977 ORTHO05D002246 2.3e-07 58.5 41 58.5
BcaB05g21759 Brassica carinata HOM05D001977 ORTHO05D002246 2.3e-07 58.5 36 63.9
MELO3C012379.2 Cucumis melo HOM05D001977 ORTHO05D002246 2.3e-07 58.5 29 72.4
MELO3C019854.2 Cucumis melo HOM05D001977 ORTHO05D002246 2.3e-07 58.5 29 75.9
Nitab4.5_0000593g0320 Nicotiana tabacum HOM05D001977 ORTHO05D002246 2.3e-07 58.5 39 64.1
Nitab4.5_0006383g0020 Nicotiana tabacum HOM05D001977 ORTHO05D002246 2.3e-07 58.5 39 64.1
Sed0011280 Sechium edule HOM05D001977 ORTHO05D002246 2.3e-07 58.5 29 72.4
SEGI_12246 Sequoiadendron giganteum HOM05D001977 ORTHO05D002246 2.3e-07 58.5 36 61.1
unitig_736.g22317 Utricularia gibba HOM05D001977 ORTHO05D002246 2.3e-07 58.5 42 57.1
arahy.Tifrunner.gnm1.ann1.BZ31U7 Arachis hypogaea HOM05D001977 ORTHO05D002246 3.0e-07 58.2 35 65.7
arahy.Tifrunner.gnm1.ann1.G6UQCB Arachis hypogaea HOM05D001977 ORTHO05D002246 3.0e-07 58.2 35 65.7
CiPaw.02G169700 Carya illinoinensis HOM05D001977 ORTHO05D002246 3.0e-07 58.2 68 45.6
Migut.F01670 Erythranthe guttata HOM05D001977 ORTHO05D002246 3.0e-07 58.2 71 49.3
Hma1.2p1_0361F.1_g135940 Hydrangea macrophylla HOM05D001977 ORTHO05D002246 3.0e-07 58.2 58 48.3
Solyc11g007840.3 Solanum lycopersicum HOM05D001977 ORTHO05D002246 3.0e-07 58.2 29 72.4
Sopen11g003700 Solanum pennellii HOM05D001977 ORTHO05D002246 3.0e-07 58.2 29 72.4
PGSC0003DMG400027328 Solanum tuberosum HOM05D001977 ORTHO05D002246 3.0e-07 58.2 29 72.4
THA.LOC104816682 Tarenaya hassleriana HOM05D001977 ORTHO05D002246 3.0e-07 58.2 41 56.1
CAN.G135.31 Capsicum annuum HOM05D001977 ORTHO05D002246 3.9e-07 57.8 39 64.1
Gohir.A05G290600 Gossypium hirsutum HOM05D001977 ORTHO05D002246 3.9e-07 57.8 29 72.4
Manes.07G093200 Manihot esculenta HOM05D001977 ORTHO05D002246 3.9e-07 57.8 52 51.9
PSO063G1346 Papaver somniferum HOM05D001977 ORTHO05D002246 3.9e-07 57.8 36 63.9
PSO339G4809 Papaver somniferum HOM05D001977 ORTHO05D002246 3.9e-07 57.8 36 63.9
Peaxi162Scf00321g00216 Petunia axillaris HOM05D001977 ORTHO05D002246 3.9e-07 57.8 39 61.5
PGR142G3455 Punica granatum HOM05D001977 ORTHO05D002246 3.9e-07 57.8 29 69.0
Sabra10G0179800 Salix brachista HOM05D001977 ORTHO05D002246 3.9e-07 57.8 29 72.4
VMungo0720G1029 Vigna mungo HOM05D001977 ORTHO05D002246 3.9e-07 57.8 36 61.1
Ah.09g232530 Amaranthus hybridus HOM05D001977 ORTHO05D002246 5.1e-07 57.4 36 63.9
CsaV3_5G035780 Cucumis sativus L. HOM05D001977 ORTHO05D002246 5.1e-07 57.4 29 69.0
Potri.010G232000 Populus trichocarpa HOM05D001977 ORTHO05D002246 5.1e-07 57.4 36 61.1
Hund17861 Selenicereus undatus HOM05D001977 ORTHO05D002246 5.1e-07 57.4 41 56.1
Sc20g0001430 Simmondsia chinensis HOM05D001977 ORTHO05D002246 5.1e-07 57.4 36 58.3
HPP92_022570 Vanilla planifolia HOM05D001977 ORTHO05D002246 5.1e-07 57.4 36 63.9
Cc02_g10480 Coffea canephora HOM05D001977 ORTHO05D002246 6.7e-07 57.0 50 48.0
SGA_v2.0_scaffold62G21511 Striga asiatica HOM05D001977 ORTHO05D002246 6.7e-07 57.0 29 72.4
ClCG05G021470 Citrullus lanatus HOM05D001977 ORTHO05D002246 8.7e-07 56.6 29 69.0
Dinv43879 Davidia involucrata HOM05D001977 ORTHO05D002246 8.7e-07 56.6 36 66.7
Gorai.009G307600 Gossypium raimondii HOM05D001977 ORTHO05D002246 8.7e-07 56.6 29 69.0
Psat4g157160 Pisum sativum HOM05D001977 ORTHO05D002246 8.7e-07 56.6 36 72.2
RcHm_v2.0_Chr1g0336581 Rosa chinensis HOM05D001977 ORTHO05D002246 8.7e-07 56.6 52 50.0
Aqoxy1G01034 Aquilegia oxysepala HOM05D001977 ORTHO05D002246 1.1e-06 56.2 36 61.1
Aqoxy1G01052 Aquilegia oxysepala HOM05D001977 ORTHO05D002246 1.1e-06 56.2 36 61.1
COL.COLO4_34160 Corchorus olitorius HOM05D001977 ORTHO05D002246 1.1e-06 56.2 52 50.0
Duzib128G0497 Durio zibethinus HOM05D001977 ORTHO05D002246 1.1e-06 56.2 52 50.0
HanXRQChr08g0218341 Helianthus annuus HOM05D001977 ORTHO05D002246 1.1e-06 56.2 41 56.1
Manes.01G251000 Manihot esculenta HOM05D001977 ORTHO05D002246 1.1e-06 56.2 36 66.7
Medtr8g028395 Medicago truncatula HOM05D001977 ORTHO05D002246 1.1e-06 56.2 36 69.4
Hund16682 Selenicereus undatus HOM05D001977 ORTHO05D002246 1.1e-06 56.2 42 57.1
Cpa.g.sc128.72 Carica papaya HOM05D001977 ORTHO05D002246 1.5e-06 55.8 29 65.5
AUR62030172 Chenopodium quinoa HOM05D001977 ORTHO05D002246 1.5e-06 55.8 36 63.9
DCAR_019055 Daucus carota HOM05D001977 ORTHO05D002246 1.5e-06 55.8 41 61.0
QL04p058948 Quercus lobata HOM05D001977 ORTHO05D002246 1.5e-06 55.8 36 66.7
QL08p052911 Quercus lobata HOM05D001977 ORTHO05D002246 1.5e-06 55.8 68 42.6
TPR.G18147 Trifolium pratense HOM05D001977 ORTHO05D002246 1.5e-06 55.8 36 69.4
TWI63G1114 Tripterygium wilfordii HOM05D001977 ORTHO05D002246 1.5e-06 55.8 29 72.4
Actinidia10087 Actinidia chinensis HOM05D001977 ORTHO05D002246 1.9e-06 55.5 36 66.7
ECA233G0301 Erigeron canadensis HOM05D001977 ORTHO05D002246 1.9e-06 55.5 36 61.1
HanXRQChr17g0562251 Helianthus annuus HOM05D001977 ORTHO05D002246 1.9e-06 55.5 36 66.7
RcHm_v2.0_Chr1g0358371 Rosa chinensis HOM05D001977 ORTHO05D002246 1.9e-06 55.5 38 63.2
Sed0024460 Sechium edule HOM05D001977 ORTHO05D002246 1.9e-06 55.5 36 63.9
SEGI_36466 Sequoiadendron giganteum HOM05D001977 ORTHO05D002246 1.9e-06 55.5 36 63.9
COL.COLO4_07703 Corchorus olitorius HOM05D001977 ORTHO05D002246 2.5e-06 55.1 52 48.1
HanXRQChr16g0523821 Helianthus annuus HOM05D001977 ORTHO05D002246 2.5e-06 55.1 36 63.9
Lsat_1_v5_gn_8_22761 Lactuca sativa HOM05D001977 ORTHO05D002246 2.5e-06 55.1 36 61.1
MSTRG.20874 Avicennia marina HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
Cfa003855 Carpinus fangiana HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
Ciclev10018649m.g Citrus clementina HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
Haze_15594 Corylus avellana HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
FvH4_7g15660 Fragaria vesca HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
FAN01G0097 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
FAN03G1732 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
FAN06G3533 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
FAN10G0843 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
FAN10G4099 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
Lj3g0010045 Lotus japonicus HOM05D001977 ORTHO05D002246 3.3e-06 54.7 42 57.1
Lalb_Chr10g0096531 Lupinus albus HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
RcHm_v2.0_Chr1g0358361 Rosa chinensis HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 66.7
TWI23G0084 Tripterygium wilfordii HOM05D001977 ORTHO05D002246 3.3e-06 54.7 36 63.9
arahy.Tifrunner.gnm1.ann1.VW0VG8 Arachis hypogaea HOM05D001977 ORTHO05D002246 4.3e-06 54.3 28 75.0
Duzib133G0786 Durio zibethinus HOM05D001977 ORTHO05D002246 4.3e-06 54.3 36 63.9
Eucgr.E00083 Eucalyptus grandis HOM05D001977 ORTHO05D002246 4.3e-06 54.3 36 66.7
Mapoly0058s0074 Marchantia polymorpha HOM05D001977 ORTHO05D002246 4.3e-06 54.3 36 61.1
Nn1g01751 Nelumbo nucifera HOM05D001977 ORTHO05D002246 4.3e-06 54.3 36 63.9
THA.LOC104825864 Tarenaya hassleriana HOM05D001977 ORTHO05D002246 4.3e-06 54.3 29 69.0
Ah.05g180040 Amaranthus hybridus HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
CiPaw.01G069600 Carya illinoinensis HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
Cc02_g38760 Coffea canephora HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
COL.COLO4_06362 Corchorus olitorius HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 66.7
Duzib138G0834 Durio zibethinus HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
Lsat_1_v5_gn_3_138461 Lactuca sativa HOM05D001977 ORTHO05D002246 5.6e-06 53.9 33 60.6
Lalb_Chr17g0338911 Lupinus albus HOM05D001977 ORTHO05D002246 5.6e-06 53.9 41 58.5
MBI07_g06317_MAGBIO Magnolia biondii HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
Manes.05G027800 Manihot esculenta HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
Rhsim01G0168400 Rhododendron simsii HOM05D001977 ORTHO05D002246 5.6e-06 53.9 28 71.4
Rhsim11G0144700 Rhododendron simsii HOM05D001977 ORTHO05D002246 5.6e-06 53.9 28 71.4
SGA_v2.0_scaffold43G16387 Striga asiatica HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 66.7
TAR374G0937 Trochodendron aralioides HOM05D001977 ORTHO05D002246 5.6e-06 53.9 36 63.9
CSS0026488 Camellia sinensis var. sinensis HOM05D001977 ORTHO05D002246 7.4e-06 53.5 28 71.4
CSS0043665 Camellia sinensis var. sinensis HOM05D001977 ORTHO05D002246 7.4e-06 53.5 28 71.4
CANSAT56G4081 Cannabis sativa HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 63.9
Ca_23547_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 7.4e-06 53.5 41 58.5
Ca_30879_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 7.4e-06 53.5 41 58.5
ECA234G3284 Erigeron canadensis HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 63.9
Gohir.D11G098100 Gossypium hirsutum HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 63.9
Gorai.007G104300 Gossypium raimondii HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 63.9
Rhsim07G0008900 Rhododendron simsii HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 61.1
Sed0012656 Sechium edule HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 63.9
TWI14G0955 Tripterygium wilfordii HOM05D001977 ORTHO05D002246 7.4e-06 53.5 43 55.8
GSVIVG01027020001 Vitis vinifera HOM05D001977 ORTHO05D002246 7.4e-06 53.5 36 63.9
MSTRG.4828 Avicennia marina HOM05D001977 ORTHO05D002246 9.6e-06 53.1 36 63.9
Hma1.2p1_0783F.1_g217010 Hydrangea macrophylla HOM05D001977 ORTHO05D002246 9.6e-06 53.1 36 61.1
Oeu022857.1 Olea europaea HOM05D001977 ORTHO05D002246 9.6e-06 53.1 36 63.9
Potri.014G092500 Populus trichocarpa HOM05D001977 ORTHO05D002246 9.6e-06 53.1 36 61.1
Sabra14G0067100 Salix brachista HOM05D001977 ORTHO05D002246 9.6e-06 53.1 36 61.1
SalBow5G5061 Salvia bowleyana HOM05D001977 ORTHO05D002246 9.6e-06 53.1 41 56.1
Thecc.01G350000 Theobroma cacao HOM05D001977 ORTHO05D002246 9.6e-06 53.1 28 67.9


User provided reference genes

Program Settings