Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.9e-76 287.0 138 100.0
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.7e-59 230.7 119 93.3
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 7.2e-45 184.1 119 75.6
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 7.2e-45 184.1 119 72.3
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 8.0e-44 180.6 119 71.4
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 4.0e-43 178.3 119 69.7
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.5e-42 176.4 119 66.4
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.6e-42 175.6 119 65.5
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 2.6e-42 175.6 119 66.4
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 5.7e-42 174.5 119 68.9
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.8e-41 172.2 119 63.9
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 4.8e-41 171.4 119 65.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 8.3e-41 170.6 119 64.7
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.4e-40 169.1 116 65.5
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.1e-40 168.3 119 63.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.0e-39 166.0 119 58.8
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.7e-39 165.6 119 58.8
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 3.5e-39 165.2 119 62.2
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.5e-39 165.2 116 63.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 7.7e-39 164.1 118 61.9
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.3e-38 163.3 119 58.0
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.3e-38 163.3 119 59.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-38 162.5 119 59.7
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.9e-38 162.2 119 58.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 3.8e-38 161.8 119 62.2
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 8.5e-38 160.6 119 58.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 8.5e-38 160.6 119 59.7
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 8.5e-38 160.6 119 61.3
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.1e-37 160.2 120 62.5
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.1e-37 160.2 120 62.5
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.5e-37 159.8 119 58.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.5e-37 159.8 118 61.0
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.5e-37 159.8 119 58.8
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.5e-37 159.8 119 60.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.9e-37 159.5 119 58.8
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.9e-37 159.5 119 55.5
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.9e-37 159.5 119 55.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 2.5e-37 159.1 119 58.8
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 3.2e-37 158.7 119 58.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 4.2e-37 158.3 119 58.0
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 7.2e-37 157.5 119 60.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 9.4e-37 157.1 121 60.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 9.4e-37 157.1 121 60.3
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.2e-36 156.8 121 60.3
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-36 156.0 119 53.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.7e-36 155.6 121 59.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.6e-36 155.2 120 60.8
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 4.7e-36 154.8 118 60.2
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 6.1e-36 154.5 119 58.8
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 8.0e-36 154.1 118 60.2
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.0e-36 154.1 121 58.7
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-35 153.7 121 58.7
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.0e-35 153.7 121 58.7
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.0e-35 153.7 119 56.3
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.8e-35 152.9 119 58.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.8e-35 152.9 119 58.8
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.8e-35 152.9 119 58.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 6.8e-35 151.0 119 58.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 8.8e-35 150.6 122 59.8
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.0e-34 149.4 119 57.1
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 3.4e-34 148.7 120 58.3
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.7e-34 147.9 119 56.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.5e-34 147.5 120 58.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.5e-34 147.5 120 58.3
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 9.8e-34 147.1 119 59.7
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.8e-33 145.6 122 54.1
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 2.8e-33 145.6 120 59.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.7e-33 145.2 122 58.2
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 6.3e-33 144.4 121 56.2
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.3e-33 144.4 120 57.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 6.3e-33 144.4 119 55.5
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 8.3e-33 144.1 120 57.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.4e-32 143.3 122 54.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.4e-32 143.3 122 53.3
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.4e-32 142.5 122 53.3
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.4e-32 142.5 122 53.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.4e-32 142.5 122 57.4
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 2.4e-32 142.5 122 52.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.4e-32 142.5 122 54.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.1e-32 141.7 122 53.3
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.1e-32 141.7 119 52.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 4.1e-32 141.7 119 52.9
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 9.1e-32 140.6 122 51.6
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 9.1e-32 140.6 122 52.5
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.6e-31 139.8 122 52.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 3.5e-31 138.7 122 51.6
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 3.5e-31 138.7 122 51.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 5.9e-31 137.9 122 50.8
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 5.9e-31 137.9 119 52.1
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 5.9e-31 137.9 119 52.1
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 5.9e-31 137.9 120 58.3
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 7.7e-31 137.5 120 55.8
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.0e-30 137.1 122 51.6
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.3e-30 136.7 94 64.9
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.7e-30 136.3 122 51.6
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.9e-30 135.6 123 51.2
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 6.6e-30 134.4 126 50.0
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 8.6e-30 134.0 123 51.2
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 8.6e-30 134.0 119 48.7
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.1e-29 133.7 94 62.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.5e-29 133.3 152 47.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 7.2e-29 131.0 152 47.4
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.6e-28 129.8 86 70.9
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.8e-28 129.0 146 49.3
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.7e-28 128.3 114 50.9
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-27 126.7 122 49.2
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 1.8e-27 126.3 146 45.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.0e-27 125.6 119 45.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 5.2e-27 124.8 146 43.8
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.8e-27 124.4 86 64.0
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 8.9e-27 124.0 102 59.8
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.2e-26 123.6 146 44.5
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.5e-26 123.2 145 44.8
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.7e-25 119.8 133 48.1
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.0e-23 112.8 120 48.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.0e-23 112.8 120 48.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 2.9e-22 109.0 91 57.1
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.0e-22 108.2 152 39.5
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 3.3e-21 105.5 75 66.7
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 9.5e-21 104.0 71 63.4
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.2e-20 103.6 121 47.1
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 6.1e-20 101.3 152 34.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.3e-19 99.4 152 36.2
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.1e-19 99.0 119 39.5
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 3.1e-19 99.0 152 36.2
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 4.0e-19 98.6 152 36.2
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.0e-19 98.6 174 33.3
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 9.8e-18 94.0 118 34.7
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.7e-17 93.2 119 39.5
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 2.2e-17 92.8 100 48.0
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.7e-17 92.0 73 50.7
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 2.4e-16 89.4 125 39.2
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-15 87.0 119 40.3
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.0e-14 84.0 98 44.9
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.0e-14 84.0 122 41.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.3e-14 82.8 70 55.7
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 8.6e-14 80.9 124 34.7
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.1e-11 73.9 59 52.5
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.1e-11 73.9 59 52.5
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.6e-10 69.3 120 34.2
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.5e-10 67.8 43 76.7
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.9e-09 65.9 120 33.3
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 6.4e-09 64.7 127 29.9
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 2.7e-07 59.3 37 64.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 2.3e-06 56.2 44 52.3
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 2.3e-06 56.2 94 33.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 3.9e-06 55.5 127 32.3


User provided reference genes

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