Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.5e-46 186.4 90 100.0
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.5e-38 161.8 78 97.4
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 8.6e-31 136.7 78 79.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.3e-30 134.4 78 80.8
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 9.9e-27 123.2 78 71.8
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 9.9e-27 123.2 78 71.8
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 4.9e-26 120.9 87 66.7
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 3.2e-25 118.2 79 70.9
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.1e-23 110.9 78 64.1
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.2e-21 106.3 77 62.3
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.4e-20 102.1 78 64.1
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 4.4e-19 97.8 83 60.2
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 4.4e-19 97.8 79 59.5
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.9e-17 92.4 45 86.7
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.4e-17 92.0 77 58.4
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 4.2e-17 91.3 79 53.2
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 3.5e-16 88.2 79 50.6
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 4.6e-16 87.8 79 55.7
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 6.0e-16 87.4 75 53.3
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 7.8e-16 87.0 81 56.8
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 5.1e-15 84.3 74 51.4
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 7.3e-14 80.5 53 67.9
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 9.6e-14 80.1 67 52.2
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.2e-13 79.7 75 53.3
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.6e-13 79.3 74 51.4
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 2.1e-13 79.0 74 51.4
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.8e-13 78.6 74 51.4
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.8e-13 78.6 67 50.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.8e-13 78.6 74 51.4
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 3.6e-13 78.2 74 51.4
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.7e-13 77.8 74 51.4
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 6.2e-13 77.4 84 44.0
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.2e-13 77.4 73 50.7
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.1e-13 77.0 76 47.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 8.1e-13 77.0 76 47.4
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.4e-12 76.3 73 52.1
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.4e-12 75.5 71 53.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.4e-12 75.5 76 48.7
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.4e-12 75.5 76 47.4
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.4e-12 75.5 74 50.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.4e-12 75.5 76 50.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.1e-12 75.1 73 52.1
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.1e-12 75.1 76 48.7
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.1e-12 75.1 74 50.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 5.3e-12 74.3 70 51.4
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 5.3e-12 74.3 70 51.4
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 5.3e-12 74.3 70 51.4
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 5.3e-12 74.3 70 51.4
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 5.3e-12 74.3 70 51.4
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 5.3e-12 74.3 70 51.4
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 5.3e-12 74.3 74 48.6
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.3e-12 74.3 74 50.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.9e-12 73.9 74 50.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 9.0e-12 73.6 76 46.1
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.2e-11 73.2 76 46.1
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.0e-11 72.4 74 48.6
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 9.9e-11 70.1 75 48.0
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.7e-10 69.3 76 43.4
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 1.7e-10 69.3 73 45.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.2e-10 68.9 72 48.6
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 2.2e-10 68.9 75 46.7
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.2e-10 68.9 78 42.3
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 2.2e-10 68.9 76 42.1
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 2.9e-10 68.6 69 47.8
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 2.9e-10 68.6 75 45.3
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 3.8e-10 68.2 75 45.3
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 6.4e-10 67.4 76 43.4
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.1e-09 66.6 82 41.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.1e-09 66.6 82 41.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.4e-09 66.2 78 46.2
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-09 66.2 78 43.6
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-09 66.2 78 43.6
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.9e-09 65.9 75 44.0
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 3.2e-09 65.1 82 40.2
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 3.2e-09 65.1 78 41.0
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.2e-09 65.1 94 39.4
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 3.2e-09 65.1 76 46.1
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.2e-09 64.7 78 42.3
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.2e-09 64.7 79 45.6
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.2e-09 64.7 76 44.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.2e-09 64.7 76 44.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 4.2e-09 64.7 76 44.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.2e-09 64.7 81 44.4
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 5.4e-09 64.3 73 42.5
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 5.4e-09 64.3 82 39.0
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.1e-09 63.9 78 42.3
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 9.3e-09 63.5 79 41.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 9.3e-09 63.5 86 46.5
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.6e-08 62.8 82 37.8
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.6e-08 62.8 78 42.3
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 2.1e-08 62.4 78 42.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 2.1e-08 62.4 73 45.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.1e-08 62.4 78 42.3
SEGI_40975 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.7e-08 62.0 61 49.2
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 3.5e-08 61.6 73 42.5
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 6.0e-08 60.8 80 41.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 6.0e-08 60.8 80 41.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 6.0e-08 60.8 80 41.2
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 7.8e-08 60.5 77 44.2
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 7.8e-08 60.5 44 56.8
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.0e-07 60.1 75 40.0
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.0e-07 58.5 73 38.4
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 3.0e-07 58.5 50 48.0
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 3.9e-07 58.2 87 36.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 5.1e-07 57.8 87 36.8
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.1e-07 57.8 87 36.8
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.6e-07 57.4 73 38.4
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 8.7e-07 57.0 76 36.8
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 8.7e-07 57.0 73 39.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 8.7e-07 57.0 55 41.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 8.7e-07 57.0 65 43.1
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 8.7e-07 57.0 76 36.8
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 1.1e-06 56.6 71 40.8
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.5e-06 56.2 75 40.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.9e-06 55.8 75 38.7
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 5.6e-06 54.3 76 35.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.6e-06 54.3 72 40.3
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 7.3e-06 53.9 64 40.6
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 7.3e-06 53.9 40 50.0


User provided reference genes

Program Settings