Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-257 891.7 500 100.0
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.6e-139 500.4 317 85.2
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 4.2e-95 352.8 250 73.6
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.6e-94 350.9 252 71.8
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.0e-93 346.3 247 71.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.6e-92 343.6 251 70.9
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.4e-92 343.2 252 70.6
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 3.4e-92 343.2 251 70.9
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 5.7e-92 342.4 252 70.2
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 5.7e-92 342.4 252 70.2
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.7e-91 340.9 319 60.2
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.2e-91 340.5 244 70.5
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 4.9e-91 339.3 318 59.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 6.3e-91 339.0 317 59.6
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.8e-90 337.4 247 68.8
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.8e-90 337.4 244 70.5
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 2.4e-90 337.0 250 70.4
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 3.2e-90 336.7 237 71.3
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 5.4e-90 335.9 250 69.6
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 7.0e-90 335.5 250 69.2
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.6e-89 334.3 250 68.8
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.0e-89 334.0 251 69.7
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.5e-89 333.2 251 67.3
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 4.6e-89 332.8 251 67.3
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.9e-89 332.4 250 67.2
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.8e-89 332.0 255 68.6
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.8e-89 332.0 255 68.6
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.0e-88 331.6 250 68.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 8.6e-88 328.6 250 67.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.6e-88 328.6 246 67.5
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.5e-87 327.8 253 67.6
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.9e-87 327.4 245 70.2
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 2.5e-87 327.0 247 67.2
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 3.3e-87 326.6 249 68.7
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 4.3e-87 326.2 249 67.5
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.6e-86 324.3 321 57.6
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.6e-86 324.3 250 66.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.1e-86 323.9 245 66.5
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.1e-86 323.9 249 66.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.1e-86 323.9 249 66.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 2.1e-86 323.9 247 66.4
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 2.1e-86 323.9 247 66.4
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 6.1e-86 322.4 246 66.7
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 6.1e-86 322.4 311 57.2
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.0e-85 321.6 244 67.6
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.4e-85 321.2 246 67.5
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.8e-85 320.9 246 66.3
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 3.1e-85 320.1 254 63.4
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 3.1e-85 320.1 268 64.2
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.1e-85 320.1 311 56.3
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 4.0e-85 319.7 315 58.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 5.2e-85 319.3 270 64.1
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.2e-84 318.2 252 66.3
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.2e-84 318.2 250 64.8
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.5e-84 317.8 250 67.6
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.0e-84 317.4 253 62.1
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 2.0e-84 317.4 253 62.1
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 2.0e-84 317.4 253 62.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.0e-84 317.4 250 66.4
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.6e-84 317.0 242 64.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 3.4e-84 316.6 250 66.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 4.4e-84 316.2 244 63.9
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.8e-84 315.8 256 64.8
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 7.5e-84 315.5 252 64.7
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 9.8e-84 315.1 252 64.7
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.7e-83 314.3 312 55.1
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.7e-83 314.3 254 61.8
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 2.9e-83 313.5 244 66.4
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 3.7e-83 313.2 240 65.8
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 3.7e-83 313.2 251 64.5
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 8.3e-83 312.0 248 64.9
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.1e-82 311.6 253 62.8
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.1e-82 311.6 244 66.4
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.1e-82 311.6 251 66.9
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.4e-82 311.2 258 63.6
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.9e-82 310.8 252 64.3
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 3.2e-82 310.1 252 63.5
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.1e-82 309.7 244 65.6
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 5.4e-82 309.3 260 62.7
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.2e-82 308.5 287 59.9
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.2e-82 308.5 287 59.9
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 9.2e-82 308.5 253 64.4
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.2e-81 308.1 278 59.4
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.0e-81 305.8 289 59.2
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 6.0e-81 305.8 318 53.5
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.3e-80 304.7 250 67.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.0e-80 303.5 241 69.3
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.9e-80 303.1 252 63.1
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.5e-79 301.2 253 62.1
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 7.3e-79 298.9 253 60.9
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.4e-77 294.7 253 61.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.8e-77 294.3 253 59.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 6.8e-77 292.4 244 61.1
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 6.4e-75 285.8 252 61.5
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 6.4e-75 285.8 252 61.5
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 4.1e-74 283.1 208 68.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 7.8e-73 278.9 247 58.7
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.9e-72 276.6 257 55.6
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 5.1e-72 276.2 232 64.2
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.5e-71 274.6 270 55.9
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 7.6e-68 262.3 244 57.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 7.6e-68 262.3 327 49.5
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.3e-67 261.5 189 68.8
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.0e-64 251.9 254 54.3
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 8.6e-64 248.8 241 52.7
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.9e-63 247.7 189 65.6
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 4.0e-61 240.0 245 51.4
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.5e-57 226.9 235 49.8
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.6e-55 219.5 155 72.9
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 7.1e-50 202.6 184 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 2.7e-49 200.7 239 44.4
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.4e-45 188.3 244 46.7
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.9e-44 182.2 154 60.4
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.3e-39 167.2 195 43.6
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 3.3e-39 167.2 244 43.9
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.6e-33 148.3 177 46.9
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 3.7e-30 137.1 230 33.9
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 2.0e-28 131.3 99 64.6
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.3e-27 128.6 250 30.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 4.8e-22 110.2 100 59.0
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 4.1e-21 107.1 108 55.6
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 7.2e-18 96.3 234 29.1
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 2.7e-17 94.4 252 27.4
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 3.6e-17 94.0 106 49.1
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.4e-12 77.4 120 39.2
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.9e-10 71.6 88 47.7
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 9.4e-10 69.3 54 64.8
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.2e-09 68.9 75 50.7
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.2e-09 68.9 75 50.7
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.7e-09 67.8 75 49.3
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 3.6e-09 67.4 75 49.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 3.6e-09 67.4 75 49.3
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 7.9e-09 66.2 130 37.7
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.0e-08 65.9 75 48.0
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.1e-07 62.4 44 61.4
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 3.3e-07 60.8 45 53.3
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 9.7e-07 59.3 38 71.1


User provided reference genes

Program Settings