Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.4e-56 221.1 115 100.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.0e-48 195.7 116 85.3
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.6e-48 195.3 116 80.2
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.9e-47 191.8 114 75.4
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 6.4e-47 190.7 116 77.6
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 6.4e-47 190.7 115 74.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 6.4e-47 190.7 115 77.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 8.4e-47 190.3 112 80.4
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 8.4e-47 190.3 116 85.3
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-46 189.5 116 76.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-46 189.5 116 76.7
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.4e-46 189.5 116 75.9
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.4e-46 189.5 115 77.4
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-46 189.5 117 84.6
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-46 189.5 117 84.6
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 5.4e-46 187.6 116 85.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 7.1e-46 187.2 114 74.6
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 9.3e-46 186.8 110 79.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-45 186.4 110 76.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.2e-45 186.4 114 79.8
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.1e-45 185.7 116 72.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.1e-45 185.7 117 83.8
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.1e-45 185.7 112 84.8
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.7e-45 185.3 111 76.6
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 7.9e-45 183.7 112 83.9
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 7.9e-45 183.7 115 72.2
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 7.9e-45 183.7 115 71.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 7.9e-45 183.7 116 85.3
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 7.9e-45 183.7 112 73.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-44 183.3 112 80.4
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.7e-44 182.6 115 82.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-44 182.6 116 78.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.3e-44 182.2 111 83.8
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.0e-44 181.8 113 84.1
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.0e-44 181.8 116 82.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.0e-44 181.8 116 82.8
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.0e-44 181.8 116 83.6
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.9e-44 181.4 114 73.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 3.9e-44 181.4 114 81.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.1e-44 181.0 111 74.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 6.6e-44 180.6 114 71.9
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 6.6e-44 180.6 115 71.3
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 6.6e-44 180.6 113 73.5
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 6.6e-44 180.6 113 72.6
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.7e-44 180.3 111 82.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.7e-44 180.3 111 82.9
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 8.7e-44 180.3 117 78.6
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 8.7e-44 180.3 115 69.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-43 179.9 116 83.6
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.5e-43 179.5 115 72.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.9e-43 179.1 114 69.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.9e-43 179.1 114 78.9
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.9e-43 179.1 116 81.9
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.5e-43 178.7 114 70.2
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.5e-43 178.7 112 83.0
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.5e-43 178.7 111 74.8
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.5e-43 178.7 116 72.4
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.5e-43 178.7 114 78.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.3e-43 178.3 113 73.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 3.3e-43 178.3 116 71.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.3e-43 178.3 113 82.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 5.6e-43 177.6 114 78.9
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 5.6e-43 177.6 114 78.9
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 7.3e-43 177.2 114 69.3
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 9.6e-43 176.8 118 83.1
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 9.6e-43 176.8 118 83.1
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 9.6e-43 176.8 117 82.1
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.3e-42 176.4 114 78.1
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.3e-42 176.4 113 81.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.6e-42 176.0 112 72.3
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.6e-42 176.0 114 71.9
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.1e-42 175.6 117 79.5
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 2.8e-42 175.3 114 79.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.6e-42 174.9 114 78.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.6e-42 174.9 114 78.9
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.8e-42 174.5 114 78.1
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.8e-42 174.5 111 79.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 6.2e-42 174.1 116 71.6
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 6.2e-42 174.1 116 77.6
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 8.1e-42 173.7 114 78.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 8.1e-42 173.7 114 78.1
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 8.1e-42 173.7 114 78.1
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 8.1e-42 173.7 116 69.8
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.1e-41 173.3 117 82.1
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.1e-41 173.3 114 79.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.4e-41 172.9 114 77.2
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.8e-41 172.6 143 59.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.1e-41 171.8 142 62.7
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.0e-41 171.4 114 77.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 4.0e-41 171.4 115 78.3
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 5.3e-41 171.0 112 72.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 9.0e-41 170.2 115 67.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 9.0e-41 170.2 114 65.8
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.5e-40 169.5 125 74.4
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 3.4e-40 168.3 118 73.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.8e-39 164.9 115 71.3
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 8.4e-39 163.7 116 75.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.1e-38 163.3 111 78.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.4e-38 162.2 101 71.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 7.1e-38 160.6 112 74.1
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 4.6e-37 157.9 113 59.3
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.9e-37 157.1 111 64.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.0e-36 156.8 117 73.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 6.7e-36 154.1 116 72.4
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 6.7e-36 154.1 116 65.5
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.6e-35 151.0 111 63.1
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 5.6e-35 151.0 109 63.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.1e-34 149.1 106 62.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.8e-34 147.9 114 61.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 6.2e-34 147.5 121 68.6
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.7e-31 139.4 87 74.7
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.9e-30 136.0 99 73.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.2e-30 135.2 114 57.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.2e-29 133.3 114 64.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.7e-29 132.1 81 75.3
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.7e-28 127.1 94 76.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 3.3e-27 125.2 81 70.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.3e-27 125.2 81 70.4
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 5.7e-27 124.4 82 78.0
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 7.4e-27 124.0 129 51.2
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 7.4e-27 124.0 83 79.5
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.3e-26 123.2 115 58.3
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.8e-26 122.1 81 69.1
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 8.2e-26 120.6 112 50.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.8e-25 119.4 118 53.4
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-25 119.4 81 69.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 2.4e-25 119.0 81 65.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.0e-25 117.1 79 81.0
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.9e-23 112.1 97 55.7
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.2e-22 108.6 55 78.2
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 5.5e-22 107.8 64 67.2
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.2e-21 106.7 104 59.6
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.2e-21 106.7 81 72.8
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.7e-21 105.5 113 48.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 2.7e-21 105.5 87 60.9
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 4.6e-21 104.8 81 72.8
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 6.1e-21 104.4 97 48.5
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.0e-20 103.6 113 39.8
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 2.3e-20 102.4 97 49.5
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 3.0e-20 102.1 63 66.7
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 3.0e-20 102.1 64 62.5
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.9e-20 101.7 74 64.9
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 8.7e-20 100.5 61 67.2
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 8.7e-20 100.5 61 67.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.1e-19 100.1 63 66.7
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.3e-19 98.2 115 42.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.6e-18 96.3 112 43.8
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 6.3e-18 94.4 66 60.6
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 6.3e-18 94.4 66 60.6
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.2e-18 94.0 68 64.7
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 2.6e-16 89.0 66 56.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 2.6e-16 89.0 66 56.1
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.3e-15 86.7 64 60.9
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.2e-15 85.9 79 54.4
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 3.8e-15 85.1 104 39.4
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 8.5e-15 84.0 111 45.0
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.4e-14 83.2 69 58.0
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 2.5e-06 55.8 31 74.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 9.4e-06 53.9 23 100.0


User provided reference genes

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