Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.6e-115 418.7 210 100.0
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.0e-54 216.5 410 39.0
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.2e-32 141.7 137 62.8
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.2e-28 129.4 448 28.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.2e-28 129.4 445 27.4
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.0e-26 124.4 448 26.1
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.1e-26 122.1 447 27.7
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.1e-25 120.9 449 26.1
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.9e-25 120.2 449 26.5
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 3.3e-25 119.4 449 26.5
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.3e-25 119.0 449 27.8
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.7e-25 118.6 435 26.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.3e-24 117.5 449 26.5
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.6e-24 117.1 449 26.1
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 8.2e-24 114.8 446 26.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.8e-23 113.6 448 26.3
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 3.1e-23 112.8 441 26.8
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 5.3e-23 112.1 445 27.0
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 6.9e-23 111.7 449 24.9
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 9.0e-23 111.3 442 25.3
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 9.0e-23 111.3 441 26.1
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.2e-22 110.9 449 25.4
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.2e-22 110.9 391 26.6
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.2e-22 110.9 448 26.3
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 3.4e-22 109.4 448 26.6
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.4e-22 109.4 446 25.8
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 4.5e-22 109.0 437 26.3
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.7e-22 108.2 439 26.0
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.7e-22 108.2 437 25.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.7e-22 108.2 445 26.1
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.0e-21 107.8 437 27.0
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.3e-21 107.5 441 26.8
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.7e-21 107.1 441 25.4
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.7e-21 107.1 441 25.2
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.7e-21 107.1 448 26.1
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.9e-21 106.3 444 25.7
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.9e-21 106.3 449 24.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 3.8e-21 105.9 62 79.0
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.8e-21 105.9 62 79.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.0e-21 105.5 442 25.6
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 6.5e-21 105.1 423 25.5
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.5e-21 104.8 433 25.4
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.1e-20 104.4 62 75.8
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.1e-20 104.4 62 75.8
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.4e-20 104.0 447 25.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.4e-20 104.0 61 77.0
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-20 103.6 78 65.4
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.9e-20 103.6 441 25.4
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.9e-20 103.6 463 25.1
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.2e-20 102.8 78 64.1
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 3.2e-20 102.8 219 36.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.2e-20 102.8 447 25.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.2e-20 102.8 448 26.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 3.2e-20 102.8 78 64.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.2e-20 102.8 219 36.5
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-20 102.4 78 64.1
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-20 102.4 78 64.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 5.5e-20 102.1 448 26.3
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 5.5e-20 102.1 60 76.7
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 5.5e-20 102.1 58 79.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.2e-20 101.7 441 24.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 7.2e-20 101.7 453 24.9
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.2e-20 101.7 78 64.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 9.4e-20 101.3 448 25.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 9.4e-20 101.3 441 24.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.2e-19 100.9 453 24.9
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.2e-19 100.9 62 72.6
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.6e-19 100.5 468 25.4
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-19 100.5 78 64.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.6e-19 100.5 78 62.8
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.1e-19 100.1 78 61.5
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.1e-19 100.1 449 25.4
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.7e-19 99.8 78 65.4
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.7e-19 99.8 78 65.4
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.7e-19 99.8 78 65.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.7e-19 99.8 82 62.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.6e-19 99.4 439 26.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 4.6e-19 99.0 449 25.4
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 4.6e-19 99.0 219 35.2
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 6.1e-19 98.6 434 25.3
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 6.1e-19 98.6 450 25.3
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 6.1e-19 98.6 450 25.3
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 6.1e-19 98.6 409 25.9
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 7.9e-19 98.2 78 62.8
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 7.9e-19 98.2 62 72.6
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 7.9e-19 98.2 62 72.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.4e-18 97.4 62 69.4
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.4e-18 97.4 61 70.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.3e-18 96.7 74 63.5
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 3.0e-18 96.3 446 24.4
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 3.0e-18 96.3 446 24.4
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 3.0e-18 96.3 446 24.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 3.0e-18 96.3 435 24.4
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.0e-18 96.3 442 25.8
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.0e-18 96.3 431 25.3
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.1e-18 95.5 75 60.0
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 5.1e-18 95.5 447 24.6
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.1e-18 95.5 457 24.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 6.7e-18 95.1 78 60.3
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 8.8e-18 94.7 448 25.0
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.1e-17 94.4 466 23.8
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.5e-17 94.0 78 60.3
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.3e-17 92.8 81 55.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.3e-17 92.4 421 25.4
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.7e-17 92.0 445 24.0
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.4e-17 91.7 80 58.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 7.4e-17 91.7 58 69.0
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.7e-16 90.5 460 24.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.8e-16 89.7 212 34.4
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.7e-16 89.4 58 63.8
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 8.2e-16 88.2 71 56.3
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 6.9e-15 85.1 65 61.5
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 6.9e-15 85.1 70 57.1
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-14 84.0 76 56.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.6e-14 83.2 73 54.8
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.4e-14 82.8 59 62.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 5.9e-14 82.0 216 31.9
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.7e-14 81.6 54 66.7
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.0e-13 81.3 82 50.0
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.3e-13 80.9 66 59.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.3e-13 80.9 54 64.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.9e-13 79.7 71 56.3
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.9e-13 79.7 212 33.0
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.9e-13 79.7 212 33.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.9e-13 79.7 75 54.7
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.0e-13 79.0 107 43.9
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.5e-13 78.6 54 63.0
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.2e-12 75.9 219 30.1
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.2e-12 75.1 178 37.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 7.2e-12 75.1 80 50.0
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.2e-11 74.3 213 32.4
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.6e-11 73.9 212 31.1
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 2.1e-11 73.6 207 30.4
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.6e-11 72.8 68 51.5
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.8e-10 70.5 209 30.6
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 8.8e-10 68.2 229 30.1
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.5e-09 67.4 69 47.8
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.5e-09 67.4 71 45.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.0e-09 67.0 211 31.8
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 2.6e-09 66.6 38 81.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 3.3e-09 66.2 54 55.6
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.8e-08 63.2 76 47.4
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.3e-08 62.0 46 58.7


User provided reference genes

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