Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1429 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 1.5e-37 159.1 82 100.0
HanXRQChr13g0420191 Helianthus annuus HOM05D005094 ORTHO05D006271 1.2e-34 149.4 82 93.9
TAR636G3194 Trochodendron aralioides HOM05D005094 ORTHO05D006271 1.5e-34 149.1 82 93.9
ATR0665G096 Amborella trichopoda HOM05D005094 ORTHO05D006271 2.0e-34 148.7 81 92.6
Oeu058195.3 Olea europaea HOM05D005094 ORTHO05D006271 3.4e-34 147.9 82 93.9
Lj2A957G10 Lonicera japonica HOM05D005094 ORTHO05D006271 1.3e-33 146.0 82 91.5
CAN.G689.3 Capsicum annuum HOM05D005094 ORTHO05D006271 1.7e-33 145.6 82 92.7
AUR62020223 Chenopodium quinoa HOM05D005094 ORTHO05D006271 2.2e-33 145.2 82 90.2
AUR62001557 Chenopodium quinoa HOM05D005094 ORTHO05D006271 2.9e-33 144.8 81 90.1
PGSC0003DMG400002984 Solanum tuberosum HOM05D005094 ORTHO05D006271 3.8e-33 144.4 82 91.5
PGSC0003DMG400005935 Solanum tuberosum HOM05D005094 ORTHO05D006271 3.8e-33 144.4 82 91.5
Zm00001eb011420 Zea mays HOM05D005094 ORTHO05D006271 6.4e-33 143.7 82 89.0
Oeu048825.1 Olea europaea HOM05D005094 ORTHO05D006271 8.4e-33 143.3 82 91.5
MSTRG.12396 Avicennia marina HOM05D005094 ORTHO05D006271 1.4e-32 142.5 82 90.2
ClCG03G012000 Citrullus lanatus HOM05D005094 ORTHO05D006271 1.4e-32 142.5 82 90.2
Solyc06g073950.3 Solanum lycopersicum HOM05D005094 ORTHO05D006271 1.9e-32 142.1 82 90.2
Sopen06g030350 Solanum pennellii HOM05D005094 ORTHO05D006271 1.9e-32 142.1 82 90.2
SalBow3G2633 Salvia bowleyana HOM05D005094 ORTHO05D006271 2.4e-32 141.7 82 89.0
unitig_8.g3656 Utricularia gibba HOM05D005094 ORTHO05D006271 2.4e-32 141.7 82 89.0
Nitab4.5_0010585g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 4.2e-32 141.0 82 90.2
Peaxi162Scf00429g00211 Petunia axillaris HOM05D005094 ORTHO05D006271 4.2e-32 141.0 82 90.2
CSS0045075 Camellia sinensis var. sinensis HOM05D005094 ORTHO05D006271 5.4e-32 140.6 82 89.0
Aqoxy1G00640 Aquilegia oxysepala HOM05D005094 ORTHO05D006271 7.1e-32 140.2 82 90.2
Solyc11g071930.2 Solanum lycopersicum HOM05D005094 ORTHO05D006271 4.6e-31 137.5 82 87.8
Sopen11g029600 Solanum pennellii HOM05D005094 ORTHO05D006271 4.6e-31 137.5 82 87.8
Nitab4.5_0005360g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 6.0e-31 137.1 81 88.9
ECA240G4521 Erigeron canadensis HOM05D005094 ORTHO05D006271 1.3e-30 136.0 82 87.8
DCAR_014060 Daucus carota HOM05D005094 ORTHO05D006271 2.3e-30 135.2 82 87.8
Os03g0261500 Oryza sativa ssp. japonica HOM05D005094 ORTHO05D006271 3.9e-30 134.4 82 84.1
PGR119G0969 Punica granatum HOM05D005094 ORTHO05D006271 5.1e-30 134.0 82 86.6
Actinidia07282 Actinidia chinensis HOM05D005094 ORTHO05D006271 6.6e-30 133.7 82 86.6
Nn2g14337 Nelumbo nucifera HOM05D005094 ORTHO05D006271 6.6e-30 133.7 82 87.8
COL.COLO4_25411 Corchorus olitorius HOM05D005094 ORTHO05D006271 8.7e-30 133.3 82 84.1
Potri.001G215800 Populus trichocarpa HOM05D005094 ORTHO05D006271 8.7e-30 133.3 82 86.6
Nn6g34655 Nelumbo nucifera HOM05D005094 ORTHO05D006271 1.1e-29 132.9 82 87.8
AT5G22080 Arabidopsis thaliana HOM05D005094 ORTHO05D006271 1.5e-29 132.5 82 80.5
CDE06G0118 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 1.9e-29 132.1 82 86.6
SHI25260 Sapria himalayana HOM05D005094 ORTHO05D006271 3.3e-29 131.3 81 84.0
Atru.chr3.3099 Acer truncatum HOM05D005094 ORTHO05D006271 4.3e-29 131.0 82 85.4
Sabra16G0127800 Salix brachista HOM05D005094 ORTHO05D006271 4.3e-29 131.0 82 85.4
SGA_v2.0_scaffold16G07505 Striga asiatica HOM05D005094 ORTHO05D006271 4.3e-29 131.0 82 86.6
Ciclev10029128m.g Citrus clementina HOM05D005094 ORTHO05D006271 2.1e-28 128.6 82 84.1
MELO3C015043.2 Cucumis melo HOM05D005094 ORTHO05D006271 2.1e-28 128.6 82 84.1
Manes.04G062000 Manihot esculenta HOM05D005094 ORTHO05D006271 2.1e-28 128.6 82 84.1
Psat5g261040 Pisum sativum HOM05D005094 ORTHO05D006271 2.8e-28 128.3 82 84.1
Carub.0006s1972 Capsella rubella HOM05D005094 ORTHO05D006271 3.6e-28 127.9 82 81.7
CBR_g39052 Chara braunii HOM05D005094 ORTHO05D006271 6.2e-28 127.1 80 80.0
CANSAT54G2440 Cannabis sativa HOM05D005094 ORTHO05D006271 1.1e-27 126.3 82 82.9
Ca_01630_v3 Cicer arietinum L. HOM05D005094 ORTHO05D006271 1.4e-27 125.9 82 81.7
Dinv18848 Davidia involucrata HOM05D005094 ORTHO05D006271 1.8e-27 125.6 82 82.9
QL01p019499 Quercus lobata HOM05D005094 ORTHO05D006271 1.8e-27 125.6 81 81.5
CsaV3_1G043920 Cucumis sativus L. HOM05D005094 ORTHO05D006271 2.4e-27 125.2 82 81.7
Lalb_Chr24g0393351 Lupinus albus HOM05D005094 ORTHO05D006271 2.4e-27 125.2 82 82.9
Medtr2g087520 Medicago truncatula HOM05D005094 ORTHO05D006271 3.1e-27 124.8 82 81.7
Phvul.005G118800 Phaseolus vulgaris HOM05D005094 ORTHO05D006271 3.1e-27 124.8 82 81.7
TPR.G4181 Trifolium pratense HOM05D005094 ORTHO05D006271 3.1e-27 124.8 82 81.7
VMungo1080G0255 Vigna mungo HOM05D005094 ORTHO05D006271 3.1e-27 124.8 82 81.7
arahy.Tifrunner.gnm1.ann1.23FIWR Arachis hypogaea HOM05D005094 ORTHO05D006271 5.3e-27 124.0 82 80.5
Duzib170G0543 Durio zibethinus HOM05D005094 ORTHO05D006271 5.3e-27 124.0 82 80.5
Sed0013610 Sechium edule HOM05D005094 ORTHO05D006271 5.3e-27 124.0 82 81.7
EL10Ac7g16288 Beta vulgaris HOM05D005094 ORTHO05D006271 9.0e-27 123.2 82 81.7
HanXRQChr03g0091071 Helianthus annuus HOM05D005094 ORTHO05D006271 1.5e-26 122.5 82 81.7
Nitab4.5_0007630g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 1.5e-26 122.5 82 81.7
Potri.009G016700 Populus trichocarpa HOM05D005094 ORTHO05D006271 2.0e-26 122.1 82 80.5
arahy.Tifrunner.gnm1.ann1.5LCH1K Arachis hypogaea HOM05D005094 ORTHO05D006271 2.6e-26 121.7 82 80.5
arahy.Tifrunner.gnm1.ann1.S09H8L Arachis hypogaea HOM05D005094 ORTHO05D006271 2.6e-26 121.7 82 80.5
Gohir.A05G077850 Gossypium hirsutum HOM05D005094 ORTHO05D006271 2.6e-26 121.7 82 79.3
Gohir.D05G080650 Gossypium hirsutum HOM05D005094 ORTHO05D006271 2.6e-26 121.7 82 79.3
Glyma.12G189400 Glycine max HOM05D005094 ORTHO05D006271 3.4e-26 121.3 82 79.3
Glyma.13G312400 Glycine max HOM05D005094 ORTHO05D006271 3.4e-26 121.3 82 79.3
Hund18798 Selenicereus undatus HOM05D005094 ORTHO05D006271 4.5e-26 120.9 82 80.5
Migut.N02437 Erythranthe guttata HOM05D005094 ORTHO05D006271 5.8e-26 120.6 82 80.5
HPP92_002190 Vanilla planifolia HOM05D005094 ORTHO05D006271 5.8e-26 120.6 82 80.5
Lj3g0019788 Lotus japonicus HOM05D005094 ORTHO05D006271 1.7e-25 119.0 82 78.0
Lsat_1_v5_gn_3_114781 Lactuca sativa HOM05D005094 ORTHO05D006271 8.4e-25 116.7 78 80.8
arahy.Tifrunner.gnm1.ann1.1B470G Arachis hypogaea HOM05D005094 ORTHO05D006271 1.1e-24 116.3 79 78.5
Sp6g23110 Schrenkiella parvula HOM05D005094 ORTHO05D006271 1.9e-24 115.5 82 76.8
SEGI_32448 Sequoiadendron giganteum HOM05D005094 ORTHO05D006271 4.2e-24 114.4 82 76.8
CARHR191450 Cardamine hirsuta HOM05D005094 ORTHO05D006271 5.4e-24 114.0 82 75.6
MBI06_g20956_MAGBIO Magnolia biondii HOM05D005094 ORTHO05D006271 9.3e-24 113.2 57 96.5
Mapoly0009s0161 Marchantia polymorpha HOM05D005094 ORTHO05D006271 9.3e-24 113.2 81 76.5
GSVIVG01037590001 Vitis vinifera HOM05D005094 ORTHO05D006271 9.3e-24 113.2 57 96.5
FvH4_5g27361 Fragaria vesca HOM05D005094 ORTHO05D006271 1.2e-23 112.8 82 74.4
Aa31LG1G13330 Aethionema arabicum HOM05D005094 ORTHO05D006271 2.1e-23 112.1 82 75.6
BcaC04g19539 Brassica carinata HOM05D005094 ORTHO05D006271 2.1e-23 112.1 82 75.6
AL6G33050 Arabidopsis lyrata HOM05D005094 ORTHO05D006271 2.7e-23 111.7 82 74.4
CiPaw.14G093900 Carya illinoinensis HOM05D005094 ORTHO05D006271 2.7e-23 111.7 57 94.7
Haze_23570 Corylus avellana HOM05D005094 ORTHO05D006271 2.7e-23 111.7 57 94.7
CAN.G1463.12 Capsicum annuum HOM05D005094 ORTHO05D006271 3.5e-23 111.3 82 75.6
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 4.6e-23 110.9 77 77.9
Eucgr.J00577 Eucalyptus grandis HOM05D005094 ORTHO05D006271 7.9e-23 110.2 82 75.6
PSO339G5010 Papaver somniferum HOM05D005094 ORTHO05D006271 1.0e-22 109.8 57 93.0
THA.LOC104810936 Tarenaya hassleriana HOM05D005094 ORTHO05D006271 1.0e-22 109.8 82 74.4
Hma1.2p1_0101F.1_g049550 Hydrangea macrophylla HOM05D005094 ORTHO05D006271 1.3e-22 109.4 57 94.7
TAR633G0299 Trochodendron aralioides HOM05D005094 ORTHO05D006271 1.3e-22 109.4 80 75.0
AagrBONN_evm.TU.Sc2ySwM_362.382 Anthoceros agrestis HOM05D005094 ORTHO05D006271 1.8e-22 109.0 82 74.4
MD11G1174000 Malus domestica HOM05D005094 ORTHO05D006271 3.0e-22 108.2 57 93.0
Prupe.6G145600 Prunus persica HOM05D005094 ORTHO05D006271 3.0e-22 108.2 57 93.0
PSO384G0916 Papaver somniferum HOM05D005094 ORTHO05D006271 3.9e-22 107.8 57 91.2
Cc01_g07820 Coffea canephora HOM05D005094 ORTHO05D006271 6.7e-22 107.1 57 93.0
Pp3c14_160 Physcomitrium patens HOM05D005094 ORTHO05D006271 6.7e-22 107.1 82 72.0
Pp3c14_168 Physcomitrium patens HOM05D005094 ORTHO05D006271 6.7e-22 107.1 82 72.0
BcaC01g06605 Brassica carinata HOM05D005094 ORTHO05D006271 8.7e-22 106.7 71 77.5
unitig_22.g5683 Utricularia gibba HOM05D005094 ORTHO05D006271 8.7e-22 106.7 57 91.2
Cpa.g.sc103.15 Carica papaya HOM05D005094 ORTHO05D006271 1.1e-21 106.3 82 73.2
Duzib168G1065 Durio zibethinus HOM05D005094 ORTHO05D006271 1.9e-21 105.5 82 73.2
Rhsim01G0200800 Rhododendron simsii HOM05D005094 ORTHO05D006271 1.9e-21 105.5 82 74.4
RcHm_v2.0_Chr7g0218521 Rosa chinensis HOM05D005094 ORTHO05D006271 1.9e-21 105.5 57 89.5
Thecc.09G271300 Theobroma cacao HOM05D005094 ORTHO05D006271 1.9e-21 105.5 82 73.2
TWI79G0842 Tripterygium wilfordii HOM05D005094 ORTHO05D006271 2.5e-21 105.1 82 73.2
BcaB05g22752 Brassica carinata HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
BcaB08g36455 Brassica carinata HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
A10p18680 Brassica napus HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
BNapus_Darmor_BZH_scaffold_38p00890 Brassica napus HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
C09p54620 Brassica napus HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
BolC2t07135H Brassica oleracea HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
BolC9t58328H Brassica oleracea HOM05D005094 ORTHO05D006271 3.3e-21 104.8 54 92.6
A03p10590 Brassica napus HOM05D001105 ORTHO05D003643 5.6e-21 104.0 82 72.0
BraA03t10371Z Brassica rapa HOM05D001105 ORTHO05D003643 5.6e-21 104.0 82 72.0
SGA_v2.0_scaffold268G46196 Striga asiatica HOM05D005094 ORTHO05D006271 5.6e-21 104.0 115 57.4
Thhalv10014509m.g Eutrema salsugineum HOM05D005094 ORTHO05D006271 1.6e-20 102.4 54 90.7
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.2e-20 100.5 77 70.1
BcaC07g41303 Brassica carinata HOM05D004977 ORTHO05D006454 1.8e-19 99.0 74 74.3
vmacro14319 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 2.4e-19 98.6 83 72.3
BraA10t43948Z Brassica rapa HOM05D005094 ORTHO05D006271 3.1e-19 98.2 82 68.3
SMO361G0106 Selaginella moellendorffii HOM05D005094 ORTHO05D006271 4.0e-19 97.8 80 70.0
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 5.3e-19 97.4 52 88.5
C08p43100 Brassica napus HOM05D004977 ORTHO05D006454 1.1e-16 89.7 96 55.2
BolC8t51866H Brassica oleracea HOM05D004977 ORTHO05D006454 1.1e-16 89.7 96 55.2
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.7e-14 80.1 53 79.2
FAN08G2987 Fragaria x ananassa HOM05D005094 ORTHO05D006271 5.7e-13 77.4 55 76.4
MD03G1156300 Malus domestica HOM05D005094 ORTHO05D006271 6.9e-11 70.5 45 82.2
Cre12.g557950 Chlamydomonas reinhardtii HOM05D005094 ORTHO05D006271 1.7e-09 65.9 75 46.7
C03p12180 Brassica napus HOM05D001105 ORTHO05D003643 2.9e-09 65.1 71 57.7
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.2e-07 59.7 53 64.2
Sc21g0006770 Simmondsia chinensis HOM05D005094 ORTHO05D006271 1.6e-07 59.3 53 66.0


User provided reference genes

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