Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 3023.0 1512 100.0
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 1761.9 1771 53.1
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 1724.1 1757 51.3
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 1682.2 1758 50.7
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 1679.5 1760 50.7
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 1675.2 1755 51.6
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 1666.0 1760 50.2
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 1664.4 1764 50.2
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 1663.7 1759 50.3
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1660.6 1760 50.6
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 1658.3 1767 49.7
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1657.1 1767 50.8
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1652.5 1767 49.5
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 1651.7 1761 50.3
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 1649.4 1759 50.4
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 1648.6 1761 49.9
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 1645.2 1769 50.0
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 1643.6 1748 49.5
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 1633.2 1760 50.0
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 1632.1 1790 49.1
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1626.7 1742 50.2
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1624.4 1782 49.6
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 1618.6 1758 48.9
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 1615.5 1764 49.3
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1614.4 1782 49.2
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 1613.6 1746 49.5
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 1610.1 1762 48.7
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 1607.8 1779 49.1
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 1600.9 1752 49.4
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 1596.3 1761 48.2
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1588.5 1759 48.4
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1580.5 1692 50.4
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 1580.5 1739 48.0
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1580.1 1764 47.7
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1579.3 1758 48.2
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1577.4 1756 48.1
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 1577.0 1764 47.6
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 1577.0 1744 49.1
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1576.6 1758 48.1
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1575.5 1757 47.8
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1574.3 1760 48.1
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 1573.9 1732 48.7
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 1573.5 1735 47.6
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 1565.4 1732 48.6
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 1563.9 1755 47.4
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 1563.9 1757 48.0
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 1562.4 1758 48.0
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 1561.2 1770 47.4
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 1559.7 1770 47.2
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 1553.5 1739 47.4
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 1553.1 1757 46.9
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 1550.8 1753 46.4
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1550.0 1720 47.7
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 1550.0 1764 47.4
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 1549.3 1720 47.8
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 1546.2 1753 47.0
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 1545.8 1758 47.4
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 1545.4 1735 47.6
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 1534.6 1761 46.7
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 1529.2 1744 46.6
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 1527.3 2061 42.8
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 1527.3 1746 46.8
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 1526.9 1748 46.5
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 1525.4 1885 44.9
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 1521.5 1738 46.4
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 1520.0 1734 46.5
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 1511.1 1778 46.5
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 1503.0 1711 48.6
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1496.1 1642 48.6
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 1494.6 1752 46.7
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 1447.2 1630 47.1
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 1434.1 1654 46.9
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1400.6 1520 48.8
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1378.6 1636 47.6
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 0.0e+00 1287.7 1742 41.8
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1206.8 1325 47.2
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1191.4 1639 42.8
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 1147.1 1801 37.1
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 1142.9 1785 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 1117.1 1799 36.3
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 1.4e-295 1020.4 1202 45.5
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 3.8e-288 995.7 1164 47.9
Peaxi162Scf00363g00321 Petunia axillaris HOM05D003919 ORTHO05D004906 1.2e-281 974.2 1151 45.4
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 2.2e-280 969.9 1145 45.9
SEGI_31724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 4.2e-263 912.5 1184 41.6
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 1.0e-261 907.9 1697 32.9
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 8.5e-256 888.3 1114 43.2
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 3.6e-254 882.9 1088 44.4
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 9.4e-247 858.2 1050 44.6
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 1.2e-236 824.7 1062 42.3
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 9.5e-231 805.1 915 47.5
Cpa.g.sc0.152 Carica papaya HOM05D003919 ORTHO05D004906 8.0e-230 802.0 1016 44.6
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 8.9e-221 771.9 944 46.2
Lj6P719T30 Lonicera japonica HOM05D003919 ORTHO05D004906 1.1e-207 728.4 904 44.7
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.1e-199 701.8 833 46.0
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 1.7e-179 634.8 770 45.3
vmacro10894 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 1.7e-179 634.8 609 54.2
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 1.4e-178 631.7 759 45.7
Cpa.g.sc0.150 Carica papaya HOM05D003919 ORTHO05D004906 3.3e-175 620.5 612 53.3
Lj6A719G42 Lonicera japonica HOM05D003919 ORTHO05D004906 5.6e-175 619.8 593 55.1
Peaxi162Scf00363g00327 Petunia axillaris HOM05D003919 ORTHO05D004906 6.4e-171 606.3 606 53.8
Nitab4.5_0003853g0030 Nicotiana tabacum HOM05D003919 ORTHO05D004906 1.8e-168 598.2 595 53.1
Solyc02g014170.3 Solanum lycopersicum HOM05D003919 ORTHO05D004906 5.1e-168 596.7 601 52.7
Nitab4.5_0000405g0050 Nicotiana tabacum HOM05D003919 ORTHO05D004906 1.3e-166 592.0 595 53.8
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.2e-130 470.7 640 42.0
SEGI_28603 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.1e-117 427.9 560 46.1
SGA_v2.0_scaffold2647G54168 Striga asiatica HOM05D003919 ORTHO05D004906 5.4e-93 347.4 510 40.4
TAR374G0021 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.2e-92 346.3 394 51.5
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 2.1e-84 318.9 281 54.8
ECA233G4978 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.9e-79 300.1 661 32.8
GSVIVG01028587001 Vitis vinifera HOM05D003919 ORTHO05D004906 9.3e-77 293.5 300 53.3
Os04g0675300 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 7.8e-76 290.4 297 53.9
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 2.1e-73 282.3 711 30.4
ECA233G5805 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.9e-66 259.2 270 48.9
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 4.8e-57 228.0 899 26.3
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 2.1e-49 202.6 1477 20.4
ECA233G0256 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.7e-49 201.8 246 47.2
AUR62015233 Chenopodium quinoa HOM05D003919 ORTHO05D004906 2.0e-31 142.9 105 64.8
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 2.7e-28 132.5 93 65.6
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 1.2e-23 117.1 92 57.6
MELO3C004964.2 Cucumis melo HOM05D003919 ORTHO05D004906 1.3e-14 87.0 67 55.2
Cre02.g110000 Chlamydomonas reinhardtii HOM05D038381 ORTHO05D034550 1.3e-06 60.5 50 46.0
TPR.G30143 Trifolium pratense HOM05D000631 ORTHO05D011720 5.0e-06 58.5 57 45.6


User provided reference genes

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