Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 7.1e-72 273.9 141 100.0
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 3.9e-54 214.9 140 76.4
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 6.7e-54 214.2 139 78.4
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.9e-53 212.6 141 75.9
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 5.6e-53 211.1 140 75.7
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 7.4e-53 210.7 140 75.0
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 9.6e-53 210.3 140 75.7
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 9.6e-53 210.3 140 75.7
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 9.6e-53 210.3 140 75.7
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.6e-52 209.5 142 73.9
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 1.6e-52 209.5 140 74.3
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.8e-52 208.8 142 75.4
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 3.6e-52 208.4 140 75.0
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 4.8e-52 208.0 140 73.6
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 8.1e-52 207.2 140 75.7
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.4e-51 206.5 141 73.0
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 1.8e-51 206.1 142 75.4
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 4.0e-51 204.9 140 74.3
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.2e-50 203.4 140 71.4
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 4.5e-50 201.4 142 71.8
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 4.5e-50 201.4 141 74.5
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 7.6e-50 200.7 140 74.3
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 7.6e-50 200.7 141 72.3
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 9.9e-50 200.3 140 72.1
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.3e-49 199.9 150 70.0
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.7e-49 199.5 142 71.8
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.7e-49 199.5 140 70.7
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.9e-49 198.7 139 70.5
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.9e-49 198.7 139 70.5
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 2.9e-49 198.7 142 71.1
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.8e-49 198.4 141 69.5
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 3.8e-49 198.4 142 70.4
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 3.8e-49 198.4 141 72.3
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.8e-49 198.4 141 72.3
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.9e-49 198.0 138 71.7
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 4.9e-49 198.0 140 69.3
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 6.4e-49 197.6 138 70.3
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 6.4e-49 197.6 142 68.3
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 8.4e-49 197.2 142 69.7
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.9e-48 196.1 140 70.0
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.9e-48 196.1 141 71.6
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 2.4e-48 195.7 142 70.4
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 3.2e-48 195.3 140 70.7
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 5.5e-48 194.5 142 69.0
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 7.1e-48 194.1 140 67.1
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 7.1e-48 194.1 140 67.1
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 9.3e-48 193.7 140 67.1
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 9.3e-48 193.7 140 67.1
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 9.3e-48 193.7 140 67.1
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.2e-47 193.4 140 67.1
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.6e-47 193.0 141 70.2
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.6e-47 193.0 138 70.3
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 2.1e-47 192.6 140 66.4
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 2.1e-47 192.6 138 69.6
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.1e-47 192.6 140 67.9
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.7e-47 192.2 140 66.4
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 3.5e-47 191.8 140 66.4
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 3.5e-47 191.8 140 65.7
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.5e-47 191.8 147 68.7
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 3.5e-47 191.8 138 70.3
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 6.0e-47 191.0 141 68.8
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 6.0e-47 191.0 140 65.7
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 6.0e-47 191.0 140 65.7
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 6.0e-47 191.0 140 65.7
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 6.0e-47 191.0 140 65.7
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 6.0e-47 191.0 140 65.7
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.9e-47 190.7 142 66.9
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.9e-47 190.7 142 65.5
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 1.0e-46 190.3 169 60.9
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.3e-46 189.9 140 67.9
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.3e-46 189.9 141 67.4
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.8e-46 189.5 140 65.0
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.8e-46 189.5 138 69.6
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.3e-46 189.1 140 70.7
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 2.3e-46 189.1 159 63.5
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 3.0e-46 188.7 165 61.8
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 5.1e-46 188.0 140 68.6
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 6.7e-46 187.6 139 69.1
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 1.5e-45 186.4 143 67.1
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.9e-45 186.0 140 63.6
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 4.3e-45 184.9 138 67.4
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.3e-45 184.9 138 68.1
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 5.6e-45 184.5 144 67.4
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 1.6e-44 183.0 138 69.6
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 1.6e-44 183.0 138 66.7
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 3.7e-44 181.8 152 61.8
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 8.1e-44 180.6 140 65.7
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 8.1e-44 180.6 140 65.7
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.8e-43 179.5 145 64.8
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 2.4e-43 179.1 140 65.7
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 2.4e-43 179.1 140 65.7
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 3.1e-43 178.7 164 59.1
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 3.1e-43 178.7 140 61.4
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 5.3e-43 177.9 141 66.7
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 6.9e-43 177.6 141 67.4
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.2e-41 172.6 138 64.5
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 2.9e-41 172.2 107 77.6
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 4.9e-41 171.4 120 70.0
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 6.5e-41 171.0 146 61.6
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.9e-40 169.5 141 62.4
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.0e-38 163.7 106 72.6
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.0e-38 163.7 121 67.8
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 1.8e-38 162.9 151 57.6
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 3.9e-38 161.8 103 75.7
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 5.1e-38 161.4 138 60.1
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 8.2e-36 154.1 107 72.0
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.9e-33 145.6 145 53.1
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.9e-33 145.6 145 53.1
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 3.8e-33 145.2 136 58.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 3.8e-33 145.2 82 81.7
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.4e-32 143.3 152 53.3
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 1.4e-32 143.3 109 71.6
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.2e-32 142.1 153 49.7
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 1.2e-31 140.2 97 75.3
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.5e-29 133.3 152 47.4
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 4.3e-29 131.7 139 51.8
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 4.3e-29 131.7 139 51.8
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 2.2e-28 129.4 142 52.1
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 1.2e-26 123.6 72 75.0
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.6e-23 112.1 92 67.4
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.5e-18 96.7 142 43.7
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 3.4e-18 95.5 52 78.8
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 1.0e-17 94.0 89 59.6
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.0e-17 94.0 104 44.2
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 5.0e-17 91.7 52 73.1
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.2e-16 89.0 125 38.4
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.2e-15 87.0 107 48.6
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.1e-15 84.7 141 31.9
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.3e-14 82.8 141 32.6
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.9e-14 82.0 95 41.1
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 2.0e-13 79.7 142 40.8
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-13 79.7 141 32.6
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.3e-13 79.0 105 41.9
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.7e-12 76.6 53 64.2
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 8.2e-12 74.3 115 40.0
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.1e-11 73.9 143 37.8
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 2.4e-11 72.8 90 48.9
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 2.4e-11 72.8 63 60.3
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 9.1e-11 70.9 248 29.4
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.5e-08 62.8 72 51.4
Nitab4.5_0012835g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.0e-06 55.5 96 37.5


User provided reference genes

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