Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.2e-200 702.2 384 100.0
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.0e-32 145.2 451 33.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.5e-31 140.6 495 30.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 6.5e-27 125.9 389 30.1
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.9e-26 124.4 406 31.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.2e-26 123.2 418 31.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 5.5e-26 122.9 348 32.5
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.2e-25 121.7 395 30.4
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.6e-25 120.2 418 31.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 7.9e-25 119.0 418 32.3
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.1e-23 115.2 381 33.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.3e-23 113.6 422 30.1
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-22 111.3 521 27.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.1e-21 108.6 377 28.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.4e-21 107.5 327 34.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.5e-20 103.2 475 28.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.9e-19 100.5 360 30.0
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.9e-19 100.5 416 29.8
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.9e-19 100.5 514 27.6
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.8e-19 100.1 291 29.9
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.8e-19 100.1 317 33.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.5e-19 99.4 342 29.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 8.5e-19 99.0 324 31.5
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-18 97.8 219 36.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.9e-18 97.8 323 30.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.5e-18 97.4 157 42.0
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.5e-18 97.4 326 30.7
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.5e-18 97.4 355 29.9
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 3.2e-18 97.1 327 31.8
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.5e-18 96.3 371 30.7
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 9.4e-18 95.5 292 32.2
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.6e-17 94.7 369 29.5
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 2.7e-17 94.0 367 30.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.7e-17 93.2 407 30.5
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 6.1e-17 92.8 346 27.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 7.9e-17 92.4 346 29.5
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.0e-16 90.5 291 32.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.2e-16 89.7 352 32.4
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 8.8e-16 89.0 289 30.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 8.8e-16 89.0 334 29.9
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 8.8e-16 89.0 323 29.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.6e-15 87.4 367 29.2
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.4e-15 86.7 318 28.9
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 5.7e-15 86.3 320 30.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 7.4e-15 85.9 528 26.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 9.7e-15 85.5 172 37.2
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 9.7e-15 85.5 308 28.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.3e-14 85.1 151 41.7
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.7e-14 84.7 487 26.5
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.2e-14 84.3 381 28.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.2e-14 84.3 376 27.9
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.8e-14 84.0 239 30.5
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.3e-14 82.8 335 29.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.1e-13 82.0 485 27.4
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.4e-13 81.6 286 30.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.4e-13 80.9 464 25.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.4e-13 80.9 397 30.0
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.1e-13 80.5 276 31.2
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.1e-13 80.5 276 31.2
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.1e-13 80.1 393 27.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.1e-13 80.1 240 29.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.3e-13 79.7 334 29.0
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.0e-13 79.3 319 29.2
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-12 78.6 186 36.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.2e-12 78.6 371 30.7
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.6e-12 77.4 329 31.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.6e-12 77.4 357 28.0
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-12 77.4 303 33.7
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 3.5e-12 77.0 322 30.7
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.5e-12 77.0 393 28.8
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.5e-12 77.0 311 28.0
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 4.5e-12 76.6 157 39.5
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.5e-12 76.6 507 26.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.5e-12 76.6 132 44.7
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 5.9e-12 76.3 197 32.5
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 7.7e-12 75.9 525 24.6
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.0e-11 75.5 333 27.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-11 75.5 301 31.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.0e-11 75.5 132 41.7
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.0e-11 75.5 357 29.4
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.7e-11 74.7 440 28.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.7e-11 74.7 308 27.9
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.2e-11 74.3 197 33.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 2.9e-11 73.9 337 28.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 2.9e-11 73.9 360 26.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-11 73.6 302 29.1
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-11 73.6 300 30.7
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.0e-11 73.2 363 27.5
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 5.0e-11 73.2 395 24.1
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 8.5e-11 72.4 407 23.6
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.1e-10 72.0 306 32.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-10 71.2 305 30.5
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.5e-10 70.9 277 27.8
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.5e-10 70.9 146 38.4
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.2e-10 70.5 426 27.5
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.2e-10 70.5 418 27.0
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.5e-10 69.7 306 31.7
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.5e-10 69.7 306 31.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 5.5e-10 69.7 274 27.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 9.4e-10 68.9 316 29.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 9.4e-10 68.9 131 41.2
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 9.4e-10 68.9 125 40.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 9.4e-10 68.9 268 32.1
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 9.4e-10 68.9 627 24.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.2e-09 68.6 298 26.5
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 1.2e-09 68.6 453 26.3
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.6e-09 68.2 434 26.0
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.6e-09 68.2 408 26.2
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.6e-09 68.2 191 34.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 2.1e-09 67.8 129 38.8
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 3.6e-09 67.0 428 26.4
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.6e-09 67.0 287 26.8
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 3.6e-09 67.0 223 29.1
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 4.7e-09 66.6 108 38.0
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.0e-08 65.5 344 27.6
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 6.7e-08 62.8 300 26.3
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.2e-07 62.0 97 41.2
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.5e-07 61.6 357 25.2
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.5e-07 61.6 247 28.3
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.6e-07 60.8 237 27.0
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.3e-07 60.5 224 30.4
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 3.3e-07 60.5 167 34.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.4e-07 60.1 148 36.5
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.4e-07 60.1 230 28.7
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 4.4e-07 60.1 408 27.5
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 9.7e-07 58.9 164 34.8
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 9.7e-07 58.9 235 28.9
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 9.7e-07 58.9 357 26.3
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 9.7e-07 58.9 142 31.0
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.3e-06 58.5 421 25.9
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-06 58.2 124 33.9
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-06 57.8 183 26.8
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.2e-06 57.8 52 59.6
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.2e-06 57.8 52 59.6
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.8e-06 57.4 86 43.0
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.7e-06 57.0 329 26.1
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 3.7e-06 57.0 171 26.9
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.7e-06 57.0 272 28.3
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 3.7e-06 57.0 242 28.1
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 4.8e-06 56.6 35 71.4
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 4.8e-06 56.6 146 29.5
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.3e-06 56.2 225 28.9
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 6.3e-06 56.2 92 38.0
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 6.3e-06 56.2 140 29.3
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 8.2e-06 55.8 143 32.9
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 8.2e-06 55.8 208 28.8
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 8.2e-06 55.8 116 32.8
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 8.2e-06 55.8 443 24.6


User provided reference genes

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