Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 8.0e-307 1056.2 512 100.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.1e-235 818.9 509 77.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.7e-235 818.1 509 77.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 4.8e-235 817.8 509 77.2
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.8e-234 815.8 506 78.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.4e-234 815.5 509 77.0
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 4.0e-234 814.7 506 77.3
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 5.3e-234 814.3 506 78.5
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.5e-233 812.8 506 77.9
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.6e-233 812.0 506 77.3
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.4e-233 811.6 506 77.7
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 3.4e-233 811.6 506 77.9
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 5.8e-233 810.8 503 76.7
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.0e-232 810.1 507 77.3
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.2e-232 808.9 506 76.3
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 2.2e-232 808.9 506 77.5
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.9e-232 808.5 506 76.7
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.8e-232 808.1 522 75.5
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 3.8e-232 808.1 507 77.5
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 4.9e-232 807.7 506 76.9
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 6.5e-232 807.4 506 76.9
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 8.4e-232 807.0 506 77.1
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.1e-231 806.6 506 76.5
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.4e-231 806.2 506 76.7
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 9.3e-231 803.5 511 76.5
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 9.3e-231 803.5 506 76.7
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.2e-230 803.1 503 76.5
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.2e-230 803.1 507 76.3
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.2e-230 803.1 506 76.7
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.2e-230 803.1 506 76.7
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.6e-230 802.7 506 76.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.6e-230 802.7 503 78.1
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.6e-230 802.7 507 76.3
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.6e-230 802.7 506 76.9
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.6e-230 802.7 492 77.6
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-230 802.4 506 75.9
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.1e-230 802.4 506 77.7
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 2.7e-230 802.0 503 76.7
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-230 802.0 506 76.1
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 3.5e-230 801.6 506 75.9
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-230 801.6 506 75.9
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 3.5e-230 801.6 506 76.5
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.5e-230 801.6 506 76.3
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.6e-230 801.2 506 75.9
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.6e-230 801.2 507 76.5
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 6.0e-230 800.8 506 76.5
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.0e-229 800.0 513 75.0
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.3e-229 799.7 507 76.3
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.3e-229 799.7 503 77.1
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.3e-229 799.7 508 77.0
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.3e-229 799.7 506 76.3
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.8e-229 799.3 506 76.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 3.0e-229 798.5 530 74.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 5.1e-229 797.7 503 76.5
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.1e-229 797.7 506 76.5
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 6.7e-229 797.3 506 76.3
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 8.7e-229 797.0 503 76.3
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 8.7e-229 797.0 508 76.2
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.1e-228 796.6 506 75.5
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.1e-228 796.6 503 76.7
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.5e-228 796.2 506 76.5
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.9e-228 795.8 503 76.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.9e-228 795.8 506 76.3
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 2.5e-228 795.4 508 75.8
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 4.3e-228 794.7 503 76.1
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 4.3e-228 794.7 506 75.9
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 9.6e-228 793.5 503 76.3
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.3e-227 793.1 506 75.5
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.6e-227 792.7 503 75.7
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.6e-227 792.7 506 75.7
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 4.8e-227 791.2 503 76.1
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.3e-227 790.8 506 75.3
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 8.2e-227 790.4 506 75.3
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 8.2e-227 790.4 506 75.5
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.1e-226 790.0 506 76.1
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.8e-226 789.3 503 76.1
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.4e-226 788.9 509 75.0
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 3.1e-226 788.5 503 75.1
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 4.1e-226 788.1 508 75.6
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 4.1e-226 788.1 506 75.7
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 6.9e-226 787.3 506 74.5
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.5e-225 786.2 536 72.0
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.6e-225 785.4 506 74.3
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 2.6e-225 785.4 506 74.1
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.0e-224 783.5 506 74.5
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 5.5e-223 777.7 503 75.1
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.6e-222 776.2 503 73.6
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.8e-221 772.7 511 73.8
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.0e-221 771.9 481 76.9
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.6e-219 766.1 506 72.5
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 8.2e-219 763.8 506 72.3
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.4e-218 762.3 509 73.1
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.4e-218 762.3 506 72.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 3.2e-215 751.9 514 72.4
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 5.5e-215 751.1 506 72.5
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.1e-214 749.2 506 72.7
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.4e-213 746.5 448 80.4
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 8.8e-213 743.8 492 73.8
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 2.2e-211 739.2 455 77.4
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.7e-211 738.4 501 72.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.3e-211 737.6 501 72.5
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.2e-209 733.4 507 70.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 7.7e-209 730.7 508 69.7
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.8e-205 719.5 511 69.5
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 5.1e-205 718.0 486 71.0
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 4.8e-203 711.4 511 69.1
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.1e-202 710.3 506 70.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 5.0e-200 701.4 506 69.4
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 5.5e-199 698.0 506 69.2
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 9.4e-199 697.2 488 68.9
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 9.4e-199 697.2 496 70.4
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.6e-198 696.4 417 80.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.5e-196 689.9 417 79.1
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.5e-196 689.9 494 67.8
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.8e-195 685.6 514 68.5
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 4.1e-194 681.8 513 64.7
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.8e-192 675.2 512 65.6
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.4e-189 666.8 497 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 7.7e-185 651.0 503 63.4
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.0e-176 624.0 506 63.2
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 8.0e-166 587.8 521 59.5
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-165 587.0 498 61.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-165 587.0 498 61.4
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 3.9e-152 542.3 323 80.8
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.5e-151 539.7 327 80.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 9.6e-135 484.6 505 50.1
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-128 464.2 285 78.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.1e-125 453.0 303 73.6
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.8e-110 403.3 506 47.8
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.2e-92 344.7 267 64.4
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.3e-91 341.3 199 81.4
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 3.6e-89 333.2 296 59.5
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.9e-59 233.8 471 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-55 221.9 298 43.3
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 4.4e-55 219.9 139 74.8
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 5.2e-48 196.4 126 75.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.7e-43 181.4 109 73.4
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.1e-42 178.7 124 71.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.5e-42 178.3 125 70.4
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.3e-42 176.0 119 73.1
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-40 172.2 132 64.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-40 172.2 132 64.4
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.0e-39 167.9 147 55.8
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.6e-36 158.3 115 67.0
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.6e-36 158.3 115 67.0
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.1e-36 157.9 95 73.7
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-35 155.2 114 66.7
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.3e-35 155.2 114 66.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 8.9e-32 142.5 76 82.9
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 4.9e-22 110.2 79 67.1
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.6e-20 105.1 211 35.1
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 7.8e-20 102.8 91 56.0
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 7.3e-18 96.3 60 71.7
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-16 92.4 75 61.3
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 6.9e-16 89.7 75 61.3
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.3e-13 79.3 69 55.1
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 1.6e-12 78.6 64 59.4
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.5e-10 72.0 55 63.6


User provided reference genes

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