Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0798 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.6e-106 389.4 201 100.0
MBI03_g28478_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D002687 1.7e-50 203.4 146 69.2
TAR628G0124 Trochodendron aralioides HOM05D001090 ORTHO05D002687 1.7e-50 203.4 145 71.7
Nn1g08972 Nelumbo nucifera HOM05D001090 ORTHO05D002687 1.9e-49 199.9 146 68.5
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 5.4e-49 198.4 145 67.6
CSS0005695 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 7.0e-49 198.0 145 71.0
Actinidia15217 Actinidia chinensis HOM05D001090 ORTHO05D002687 1.6e-48 196.8 145 69.0
CSS0001559 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 2.0e-48 196.4 145 70.3
CSS0022044 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 2.0e-48 196.4 145 70.3
COL.COLO4_09042 Corchorus olitorius HOM05D001090 ORTHO05D002687 3.5e-48 195.7 145 69.0
Thecc.08G132400 Theobroma cacao HOM05D001090 ORTHO05D002687 6.0e-48 194.9 145 69.0
GSVIVG01008813001 Vitis vinifera HOM05D001090 ORTHO05D002687 1.7e-47 193.4 145 66.9
Lsat_1_v5_gn_4_134081 Lactuca sativa HOM05D001090 ORTHO05D002687 2.3e-47 193.0 145 67.6
QL09p032695 Quercus lobata HOM05D001090 ORTHO05D002687 5.0e-47 191.8 150 66.0
EL10Ac1g01340 Beta vulgaris HOM05D001090 ORTHO05D002687 6.6e-47 191.4 145 68.3
A08p28880 Brassica napus HOM05D001090 ORTHO05D002687 6.6e-47 191.4 146 66.4
Gohir.D03G069000 Gossypium hirsutum HOM05D001090 ORTHO05D002687 8.6e-47 191.0 145 68.3
Gorai.013G107400 Gossypium raimondii HOM05D001090 ORTHO05D002687 8.6e-47 191.0 145 68.3
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.1e-46 190.7 146 66.4
Gohir.A02G110100 Gossypium hirsutum HOM05D001090 ORTHO05D002687 1.1e-46 190.7 145 68.3
Prupe.1G490400 Prunus persica HOM05D001090 ORTHO05D002687 1.1e-46 190.7 145 68.3
Sp1g19170 Schrenkiella parvula HOM05D001090 ORTHO05D002687 1.1e-46 190.7 146 66.4
Aqoxy6G00322 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 1.9e-46 189.9 146 68.5
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 1.9e-46 189.9 146 65.8
C08p20970 Brassica napus HOM05D001090 ORTHO05D002687 2.5e-46 189.5 146 65.8
BolC8t49734H Brassica oleracea HOM05D001090 ORTHO05D002687 2.5e-46 189.5 146 65.8
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 3.3e-46 189.1 146 66.4
Migut.N03263 Erythranthe guttata HOM05D001090 ORTHO05D002687 3.3e-46 189.1 151 64.9
arahy.Tifrunner.gnm1.ann1.V5YSST Arachis hypogaea HOM05D001090 ORTHO05D002687 4.3e-46 188.7 146 64.4
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 4.3e-46 188.7 145 66.9
Potri.002G078000 Populus trichocarpa HOM05D001090 ORTHO05D002687 4.3e-46 188.7 145 64.8
MD00G1100600 Malus domestica HOM05D001090 ORTHO05D002687 5.6e-46 188.3 146 67.1
PGR042G2877 Punica granatum HOM05D001090 ORTHO05D002687 5.6e-46 188.3 145 65.5
Carub.0001s2107 Capsella rubella HOM05D001090 ORTHO05D002687 7.3e-46 188.0 146 65.8
ECA232G2805 Erigeron canadensis HOM05D001090 ORTHO05D002687 9.5e-46 187.6 145 65.5
Manes.02G167501 Manihot esculenta HOM05D001090 ORTHO05D002687 9.5e-46 187.6 145 66.2
Manes.02G167701 Manihot esculenta HOM05D001090 ORTHO05D002687 9.5e-46 187.6 145 66.2
MSTRG.24175 Avicennia marina HOM05D001090 ORTHO05D002687 1.2e-45 187.2 145 66.9
FvH4_2g27750 Fragaria vesca HOM05D001090 ORTHO05D002687 1.2e-45 187.2 145 66.9
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.2e-45 187.2 145 66.9
VMungo1309G1000 Vigna mungo HOM05D001090 ORTHO05D002687 1.2e-45 187.2 145 64.1
ATR0584G059 Amborella trichopoda HOM05D001090 ORTHO05D002687 2.1e-45 186.4 146 65.8
Phvul.009G129400 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 2.1e-45 186.4 145 64.1
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.8e-45 186.0 145 66.2
Cc10_g12680 Coffea canephora HOM05D001090 ORTHO05D002687 3.6e-45 185.7 145 66.2
RcHm_v2.0_Chr6g0296621 Rosa chinensis HOM05D001090 ORTHO05D002687 3.6e-45 185.7 145 66.2
AL1G34790 Arabidopsis lyrata HOM05D001090 ORTHO05D002687 4.7e-45 185.3 149 64.4
arahy.Tifrunner.gnm1.ann1.9Y6HC5 Arachis hypogaea HOM05D001090 ORTHO05D002687 4.7e-45 185.3 145 63.4
Eucgr.F03833 Eucalyptus grandis HOM05D001090 ORTHO05D002687 4.7e-45 185.3 145 66.2
Duzib093G1991 Durio zibethinus HOM05D001090 ORTHO05D002687 6.2e-45 184.9 151 65.6
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 6.2e-45 184.9 145 66.2
Nitab4.5_0001168g0030 Nicotiana tabacum HOM05D001090 ORTHO05D002687 6.2e-45 184.9 145 64.8
SGA_v2.0_scaffold28G11973 Striga asiatica HOM05D001090 ORTHO05D002687 6.2e-45 184.9 145 66.2
Glyma.06G116900 Glycine max HOM05D001090 ORTHO05D002687 1.1e-44 184.1 145 62.8
Lalb_Chr08g0241141 Lupinus albus HOM05D001090 ORTHO05D002687 1.1e-44 184.1 145 62.8
THA.LOC104812087 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 1.1e-44 184.1 146 65.8
Sc10g0008070 Simmondsia chinensis HOM05D001090 ORTHO05D002687 1.8e-44 183.3 145 64.1
PGSC0003DMG400006051 Solanum tuberosum HOM05D001090 ORTHO05D002687 1.8e-44 183.3 145 63.4
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 2.3e-44 183.0 145 62.1
Medtr3g088555 Medicago truncatula HOM05D001090 ORTHO05D002687 2.3e-44 183.0 145 63.4
PSO832G0312 Papaver somniferum HOM05D001090 ORTHO05D002687 2.3e-44 183.0 148 63.5
CANSAT21G2061 Cannabis sativa HOM05D001090 ORTHO05D002687 3.1e-44 182.6 146 64.4
CiPaw.15G032300 Carya illinoinensis HOM05D001090 ORTHO05D002687 3.1e-44 182.6 145 63.4
MELO3C016326.2 Cucumis melo HOM05D001090 ORTHO05D002687 4.0e-44 182.2 145 64.8
CsaV3_4G006230 Cucumis sativus L. HOM05D001090 ORTHO05D002687 4.0e-44 182.2 145 64.8
Ciclev10000116m.g Citrus clementina HOM05D001090 ORTHO05D002687 6.8e-44 181.4 146 63.7
Lj1g0001372 Lotus japonicus HOM05D001090 ORTHO05D002687 8.9e-44 181.0 145 62.1
Oeu051970.1 Olea europaea HOM05D001090 ORTHO05D002687 8.9e-44 181.0 145 67.6
Sopen11g001040 Solanum pennellii HOM05D001090 ORTHO05D002687 1.2e-43 180.6 145 62.1
Solyc11g005020.3 Solanum lycopersicum HOM05D001090 ORTHO05D002687 2.0e-43 179.9 145 62.1
SGA_v2.0_scaffold81G26138 Striga asiatica HOM05D001090 ORTHO05D002687 2.6e-43 179.5 146 65.8
BraA08t34819Z Brassica rapa HOM05D001090 ORTHO05D002687 3.4e-43 179.1 131 69.5
ClCG07G007660 Citrullus lanatus HOM05D001090 ORTHO05D002687 3.4e-43 179.1 145 62.8
HanXRQChr09g0260691 Helianthus annuus HOM05D001090 ORTHO05D002687 3.4e-43 179.1 145 63.4
PSO764G0256 Papaver somniferum HOM05D001090 ORTHO05D002687 7.5e-43 177.9 148 62.8
Psat5g085000 Pisum sativum HOM05D001090 ORTHO05D002687 7.5e-43 177.9 145 62.1
unitig_22.g6741 Utricularia gibba HOM05D001090 ORTHO05D002687 7.5e-43 177.9 145 66.2
Aa31LG7G5620 Aethionema arabicum HOM05D001090 ORTHO05D002687 1.7e-42 176.8 150 64.7
AUR62007722 Chenopodium quinoa HOM05D001090 ORTHO05D002687 3.7e-42 175.6 145 61.4
TPR.G13471 Trifolium pratense HOM05D001090 ORTHO05D002687 3.7e-42 175.6 145 60.0
Sed0013290 Sechium edule HOM05D001090 ORTHO05D002687 4.9e-42 175.3 145 62.8
Sabra02G0061200 Salix brachista HOM05D001090 ORTHO05D002687 6.4e-42 174.9 167 56.9
HPP92_007345 Vanilla planifolia HOM05D001090 ORTHO05D002687 6.4e-42 174.9 146 62.3
SalBow2G0524 Salvia bowleyana HOM05D001090 ORTHO05D002687 1.1e-41 174.1 145 59.3
AUR62013420 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.4e-41 173.7 145 60.0
Hma1.2p1_0014F.1_g010140 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 1.4e-41 173.7 145 63.4
Hund17700 Selenicereus undatus HOM05D001090 ORTHO05D002687 1.9e-41 173.3 144 60.4
Hund26778 Selenicereus undatus HOM05D001090 ORTHO05D002687 1.9e-41 173.3 144 60.4
EL10Ac3g06526 Beta vulgaris HOM05D001090 ORTHO05D002687 4.1e-41 172.2 145 64.1
Zm00001eb090990 Zea mays HOM05D001090 ORTHO05D002687 1.0e-39 167.5 146 60.3
Nitab4.5_0002045g0110 Nicotiana tabacum HOM05D001090 ORTHO05D002687 1.3e-39 167.2 180 52.2
Os11g0195100 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D002687 1.3e-39 167.2 146 58.2
Hma1.2p1_1075F.1_g254480 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 1.4e-33 147.1 107 71.0
Peaxi162Scf01003g00003 Petunia axillaris HOM05D001090 ORTHO05D002687 2.5e-30 136.3 135 51.9
SEGI_39736 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 3.1e-28 129.4 121 57.9
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 3.4e-27 125.9 136 51.5
Cfa018122 Carpinus fangiana HOM05D001090 ORTHO05D002687 4.9e-26 122.1 117 55.6
Cpa.g.sc64.147 Carica papaya HOM05D001090 ORTHO05D002687 2.4e-25 119.8 89 71.9
CAN.G342.12 Capsicum annuum HOM05D001090 ORTHO05D002687 2.1e-24 116.7 89 70.8
Rhsim06G0091300 Rhododendron simsii HOM05D001090 ORTHO05D002687 5.6e-22 108.6 64 79.7
Pp3c27_7170 Physcomitrium patens HOM05D001090 ORTHO05D002687 2.8e-21 106.3 122 46.7
vmacro05517 Vaccinium macrocarpon HOM05D001090 ORTHO05D002687 4.7e-21 105.5 62 79.0
Lj7A347G44 Lonicera japonica HOM05D001090 ORTHO05D002687 3.1e-20 102.8 62 80.6
AagrBONN_evm.TU.Sc2ySwM_362.1596 Anthoceros agrestis HOM05D001090 ORTHO05D002687 1.2e-19 100.9 156 38.5
Mapoly0073s0063 Marchantia polymorpha HOM05D001090 ORTHO05D002687 3.4e-19 99.4 164 40.2
arahy.Tifrunner.gnm1.ann1.X0B7GA Arachis hypogaea HOM05D001090 ORTHO05D031521 2.7e-16 89.7 62 75.8
CBR_g50342 Chara braunii HOM05D001090 ORTHO05D002687 1.5e-14 84.0 139 34.5
arahy.Tifrunner.gnm1.ann1.W4NCT5 Arachis hypogaea HOM05D001090 ORTHO05D031521 1.3e-13 80.9 63 66.7
Glyma.09G123400 Glycine max HOM05D001090 ORTHO05D002687 4.8e-13 79.0 75 48.0
SMO347G0291 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 3.1e-12 76.3 198 31.3
SMO167G0049 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 4.0e-12 75.9 166 36.7
vmacro05516 Vaccinium macrocarpon HOM05D001090 ORTHO05D002687 9.0e-12 74.7 76 50.0
arahy.Tifrunner.gnm1.ann1.G6GS0I Arachis hypogaea HOM05D001090 ORTHO05D031521 3.2e-09 66.2 35 85.7
CAN.G342.13 Capsicum annuum HOM05D001090 ORTHO05D002687 6.0e-08 62.0 55 49.1
COL.COLO4_23129 Corchorus olitorius HOM05D001090 ORTHO05D002687 1.1e-06 57.8 95 36.8
CANSAT25G3239 Cannabis sativa HOM05D001090 ORTHO05D002687 1.5e-06 57.4 98 37.8
CARHR249770 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.5e-06 56.6 95 36.8
BcaB01g02379 Brassica carinata HOM05D001090 ORTHO05D002687 3.3e-06 56.2 95 36.8
A03p31480 Brassica napus HOM05D001090 ORTHO05D002687 3.3e-06 56.2 95 36.8
C03p38470 Brassica napus HOM05D001090 ORTHO05D002687 3.3e-06 56.2 95 36.8
BraA03t12328Z Brassica rapa HOM05D001090 ORTHO05D002687 3.3e-06 56.2 95 36.8
Carub.0006s3542 Capsella rubella HOM05D001090 ORTHO05D002687 3.3e-06 56.2 95 36.8
Eucgr.A01004 Eucalyptus grandis HOM05D001090 ORTHO05D002687 3.3e-06 56.2 98 37.8
Thhalv10028392m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 3.3e-06 56.2 95 36.8
BcaC01g06802 Brassica carinata HOM05D001090 ORTHO05D002687 4.3e-06 55.8 95 36.8
BolC3t16120H Brassica oleracea HOM05D001090 ORTHO05D002687 4.3e-06 55.8 95 36.8
Atru.chr5.862 Acer truncatum HOM05D001090 ORTHO05D002687 5.6e-06 55.5 118 32.2
CSS0020175 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 7.4e-06 55.1 95 33.7
Cc01_g21780 Coffea canephora HOM05D001090 ORTHO05D002687 7.4e-06 55.1 115 32.2
Nn4g25345 Nelumbo nucifera HOM05D001090 ORTHO05D002687 7.4e-06 55.1 121 32.2
RcHm_v2.0_Chr3g0485781 Rosa chinensis HOM05D001090 ORTHO05D002687 7.4e-06 55.1 97 34.0
AT4G01800 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 9.6e-06 54.7 95 35.8
FAN28G1233 Fragaria x ananassa HOM05D001090 ORTHO05D002687 9.6e-06 54.7 97 34.0
THA.LOC104801325 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 9.6e-06 54.7 95 34.7
Thecc.01G325300 Theobroma cacao HOM05D001090 ORTHO05D002687 9.6e-06 54.7 95 34.7


User provided reference genes

Program Settings