Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 4842.7 2369 100.0
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 3073.9 2359 63.6
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 3052.7 2361 63.8
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 2984.5 2350 62.0
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 2982.6 2348 61.8
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 2963.7 2352 61.4
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 2954.1 2358 60.9
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 2951.4 2369 61.0
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 2942.9 2362 60.9
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2939.8 2358 60.9
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 2936.4 2356 61.0
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 2935.6 2355 61.4
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 2932.5 2350 60.7
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 2930.2 2375 60.6
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 2927.1 2465 58.9
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 2926.7 2353 60.8
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 2925.6 2349 60.5
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2917.1 2362 60.5
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 2910.2 2350 60.7
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2909.0 2350 60.7
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 2898.2 2356 60.7
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 2890.1 2359 60.5
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2883.2 2350 59.9
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 2870.5 2440 58.2
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 2855.9 2350 59.7
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 2854.7 2347 59.7
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 2848.5 2346 58.6
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2838.1 2354 59.4
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 2830.8 2348 58.2
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 2824.7 2369 58.4
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 2822.0 2369 58.4
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 2816.6 2352 58.4
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 2813.5 2348 59.2
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 2811.2 2348 58.9
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 2808.9 2351 58.8
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 2804.2 2366 58.1
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2803.5 2350 59.0
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 2803.5 2358 58.9
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 2802.3 2350 59.0
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 2801.5 2355 58.8
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 2798.1 2352 57.9
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 2796.5 2350 59.1
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 2792.3 2348 58.9
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 2791.9 2348 59.0
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 2788.8 2348 58.4
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 2788.4 2349 58.8
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 2786.5 2351 58.2
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2783.1 2350 58.8
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 2782.7 2350 58.8
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2779.2 2355 57.9
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2779.2 2355 58.5
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 2778.8 2360 58.1
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 2773.0 2355 57.5
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 2773.0 2361 57.7
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 2772.7 2348 58.9
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2771.9 2352 57.5
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 2766.1 2383 57.7
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2765.3 2352 57.5
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 2765.3 2344 57.4
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 2763.4 2359 57.9
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 2762.3 2348 57.2
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 2759.2 2348 58.4
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 2758.8 2346 57.4
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 2758.4 2354 57.6
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 2753.8 2348 58.3
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 2747.2 2287 59.1
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 2743.4 2351 57.0
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 2724.9 2361 56.3
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 2718.3 2428 55.7
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 2706.4 2356 56.9
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2593.9 2266 57.3
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 2585.8 2013 63.2
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2538.8 2181 57.2
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2533.1 2306 54.4
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 2473.0 2039 59.5
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 2379.0 1997 58.4
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2306.9 2367 49.3
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2249.9 1957 56.8
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2235.3 2369 48.1
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2232.2 2384 47.1
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2132.5 2341 46.9
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 2121.3 2341 46.7
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 2119.0 2343 48.6
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 2094.3 1805 57.8
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2060.8 1849 56.6
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 1997.6 2321 44.6
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 1755.7 2228 43.0
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1626.7 2340 39.3
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1459.9 1185 60.7
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1418.7 1114 60.7
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1318.5 1063 60.2
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1246.9 2566 33.2
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 2.1e-293 1013.8 1092 49.8
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.3e-268 930.6 700 67.1
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.3e-258 898.3 3137 26.2
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 3.3e-246 857.1 1338 38.4
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 1.8e-236 824.7 638 62.5
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.6e-187 662.1 623 52.5
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.7e-154 552.4 1172 33.8
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.3e-153 548.1 658 44.2
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.2e-134 486.5 332 72.0
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 3.2e-132 478.4 312 72.8
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 4.6e-131 474.6 347 64.3
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 6.0e-123 447.6 328 64.6
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.3e-114 419.9 639 40.4
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.0e-110 406.0 268 72.0
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.6e-110 405.6 843 33.3
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.3e-105 388.7 1236 28.2
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 3.1e-103 382.1 361 51.2
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 1.3e-96 360.1 242 70.7
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 2.6e-86 325.9 244 61.9
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.0e-85 321.6 459 40.7
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 3.0e-82 312.4 1208 24.7
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 3.9e-74 285.4 700 29.4
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.3e-73 282.3 206 64.1
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.3e-73 282.3 227 58.1
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.3e-72 280.4 522 36.6
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 5.2e-58 231.9 515 30.9
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 8.8e-58 231.1 498 28.5
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 1.7e-53 216.9 203 56.2
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 5.9e-46 191.8 116 79.3
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 5.0e-45 188.7 167 58.1
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.6e-43 183.7 107 77.6
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 4.7e-43 182.2 114 76.3
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 5.2e-42 178.7 107 78.5
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 5.2e-42 178.7 107 77.6
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 6.8e-42 178.3 107 77.6
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 8.9e-42 177.9 129 65.9
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 8.9e-42 177.9 205 42.9
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.5e-41 177.2 135 63.0
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.5e-36 159.8 120 67.5
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 7.5e-33 148.3 155 46.5
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 4.1e-31 142.5 159 46.5
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 4.3e-28 132.5 173 38.7
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 6.2e-11 75.5 825 20.7
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 1.1e-10 74.7 50 70.0
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 3.1e-10 73.2 50 68.0
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 3.1e-10 73.2 80 42.5
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 3.4e-09 69.7 121 38.8
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 4.9e-08 65.9 326 22.4
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 1.4e-07 64.3 89 36.0
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 1.4e-07 64.3 37 75.7
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 2.4e-07 63.5 75 42.7
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 7.1e-07 62.0 57 52.6
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 1.2e-06 61.2 142 28.9
SMO112G0094 Selaginella moellendorffii HOM05D001677 ORTHO05D001682 1.6e-06 60.8 382 23.0
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 2.7e-06 60.1 776 19.7
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.5e-06 59.7 44 54.5


User provided reference genes

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