Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0110 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 9.7e-206 719.9 365 100.0
CDE04G3131 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 4.8e-165 584.7 408 78.4
Prupe.1G321000 Prunus persica HOM05D003851 ORTHO05D005657 2.3e-106 389.8 422 53.3
QL01p002786 Quercus lobata HOM05D003851 ORTHO05D005657 8.7e-106 387.9 413 56.4
Hma1.2p1_0114F.1_g055400 Hydrangea macrophylla HOM05D003851 ORTHO05D005657 1.5e-105 387.1 426 53.8
Potri.008G126900 Populus trichocarpa HOM05D003851 ORTHO05D005657 2.8e-104 382.9 419 56.1
CiPaw.06G014300 Carya illinoinensis HOM05D003851 ORTHO05D005657 4.8e-104 382.1 412 54.9
arahy.Tifrunner.gnm1.ann1.GYNY95 Arachis hypogaea HOM05D003851 ORTHO05D005657 8.1e-104 381.3 412 55.3
TAR622G1410 Trochodendron aralioides HOM05D003851 ORTHO05D005657 1.4e-103 380.6 412 54.4
CSS0020493 Camellia sinensis var. sinensis HOM05D003851 ORTHO05D005657 1.8e-103 380.2 417 54.4
Phvul.007G035300 Phaseolus vulgaris HOM05D003851 ORTHO05D005657 1.8e-103 380.2 415 55.2
Atru.chr11.357 Acer truncatum HOM05D003851 ORTHO05D005657 2.4e-103 379.8 419 54.9
Nitab4.5_0001648g0010 Nicotiana tabacum HOM05D003851 ORTHO05D005657 2.4e-103 379.8 423 54.4
Aqoxy3G00152 Aquilegia oxysepala HOM05D003851 ORTHO05D005657 5.3e-103 378.6 430 54.4
ATR0602G154 Amborella trichopoda HOM05D003851 ORTHO05D005657 9.0e-103 377.9 408 53.7
Thecc.02G217200 Theobroma cacao HOM05D003851 ORTHO05D005657 3.4e-102 375.9 411 54.0
Nitab4.5_0010188g0010 Nicotiana tabacum HOM05D003851 ORTHO05D005657 4.5e-102 375.6 422 55.0
Glyma.20G124000 Glycine max HOM05D003851 ORTHO05D005657 7.6e-102 374.8 414 54.6
Gorai.005G192900 Gossypium raimondii HOM05D003851 ORTHO05D005657 1.7e-101 373.6 418 53.8
VMungo0720G3117 Vigna mungo HOM05D003851 ORTHO05D005657 2.2e-101 373.2 414 54.6
MD16G1033300 Malus domestica HOM05D003851 ORTHO05D005657 4.9e-101 372.1 427 52.9
Rhsim09G0101400 Rhododendron simsii HOM05D003851 ORTHO05D005657 4.9e-101 372.1 429 52.2
CSS0002048 Camellia sinensis var. sinensis HOM05D003851 ORTHO05D005657 1.1e-100 370.9 418 52.6
Cpa.g.sc65.100 Carica papaya HOM05D003851 ORTHO05D005657 1.1e-100 370.9 420 52.9
Gohir.D02G171500 Gossypium hirsutum HOM05D003851 ORTHO05D005657 1.4e-100 370.5 411 53.8
Medtr1g108690 Medicago truncatula HOM05D003851 ORTHO05D005657 1.4e-100 370.5 414 54.1
Peaxi162Scf00119g01313 Petunia axillaris HOM05D003851 ORTHO05D005657 1.9e-100 370.2 429 53.6
Sabra08G0095800 Salix brachista HOM05D003851 ORTHO05D005657 1.9e-100 370.2 439 52.8
Lalb_Chr17g0338751 Lupinus albus HOM05D003851 ORTHO05D005657 3.2e-100 369.4 417 54.2
Nitab4.5_0000350g0210 Nicotiana tabacum HOM05D003851 ORTHO05D005657 3.2e-100 369.4 429 52.9
arahy.Tifrunner.gnm1.ann1.QBU7FE Arachis hypogaea HOM05D003851 ORTHO05D005657 5.5e-100 368.6 411 53.5
Gohir.A03G148400 Gossypium hirsutum HOM05D003851 ORTHO05D005657 5.5e-100 368.6 422 52.8
PGSC0003DMG400030558 Solanum tuberosum HOM05D003851 ORTHO05D005657 5.5e-100 368.6 423 53.0
PSO017G5384 Papaver somniferum HOM05D003851 ORTHO05D005657 9.3e-100 367.9 428 53.0
SalBow8G4927 Salvia bowleyana HOM05D003851 ORTHO05D005657 1.6e-99 367.1 433 51.5
Sopen04g002640 Solanum pennellii HOM05D003851 ORTHO05D005657 1.6e-99 367.1 447 50.8
TAR629G0727 Trochodendron aralioides HOM05D003851 ORTHO05D005657 2.1e-99 366.7 423 51.8
MD13G1031100 Malus domestica HOM05D003851 ORTHO05D005657 2.7e-99 366.3 429 51.3
CsaV3_5G028640 Cucumis sativus L. HOM05D003851 ORTHO05D005657 3.5e-99 365.9 424 51.4
Nitab4.5_0004524g0020 Nicotiana tabacum HOM05D003851 ORTHO05D005657 4.6e-99 365.5 431 53.4
MELO3C005328.2 Cucumis melo HOM05D003851 ORTHO05D005657 7.9e-99 364.8 422 51.7
Lj5g0011385 Lotus japonicus HOM05D003851 ORTHO05D005657 7.9e-99 364.8 420 53.6
TAR629G0282 Trochodendron aralioides HOM05D003851 ORTHO05D005657 7.9e-99 364.8 423 51.5
Potri.010G116400 Populus trichocarpa HOM05D003851 ORTHO05D005657 1.0e-98 364.4 414 53.1
PSO478G0832 Papaver somniferum HOM05D003851 ORTHO05D005657 1.8e-98 363.6 428 52.6
COL.COLO4_10968 Corchorus olitorius HOM05D003851 ORTHO05D005657 3.0e-98 362.8 419 51.6
Glyma.10G266600 Glycine max HOM05D003851 ORTHO05D005657 3.0e-98 362.8 416 53.6
SGA_v2.0_scaffold376G50293 Striga asiatica HOM05D003851 ORTHO05D005657 3.9e-98 362.5 429 52.0
MSTRG.2194 Avicennia marina HOM05D003851 ORTHO05D005657 6.7e-98 361.7 413 52.8
ClCG01G006040 Citrullus lanatus HOM05D003851 ORTHO05D005657 1.1e-97 360.9 423 52.0
Sed0026980 Sechium edule HOM05D003851 ORTHO05D005657 1.5e-97 360.5 434 51.4
CANSAT01G1493 Cannabis sativa HOM05D003851 ORTHO05D005657 1.9e-97 360.1 418 52.4
MBI06_g17215_MAGBIO Magnolia biondii HOM05D003851 ORTHO05D005657 3.3e-97 359.4 423 52.5
Solyc04g007560.3 Solanum lycopersicum HOM05D003851 ORTHO05D005657 7.4e-97 358.2 447 50.3
Manes.06G062600 Manihot esculenta HOM05D003851 ORTHO05D005657 2.1e-96 356.7 411 52.1
Eucgr.B02881 Eucalyptus grandis HOM05D003851 ORTHO05D005657 3.1e-95 352.8 415 51.8
Lalb_Chr21g0308571 Lupinus albus HOM05D003851 ORTHO05D005657 4.1e-95 352.4 420 52.6
Ca_23695_v3 Cicer arietinum L. HOM05D003851 ORTHO05D005657 5.3e-95 352.1 412 51.7
Migut.E00398 Erythranthe guttata HOM05D003851 ORTHO05D005657 1.5e-94 350.5 423 50.8
Nn4g24048 Nelumbo nucifera HOM05D003851 ORTHO05D005657 2.0e-94 350.1 422 50.5
TPR.G4868 Trifolium pratense HOM05D003851 ORTHO05D005657 2.6e-94 349.7 412 51.7
MSTRG.878 Avicennia marina HOM05D003851 ORTHO05D005657 3.4e-94 349.4 416 51.4
Ciclev10014287m.g Citrus clementina HOM05D003851 ORTHO05D005657 3.4e-94 349.4 428 50.0
Ah.16g102720 Amaranthus hybridus HOM05D003851 ORTHO05D005657 4.5e-94 349.0 451 48.3
Duzib268G1062 Durio zibethinus HOM05D003851 ORTHO05D005657 1.0e-93 347.8 421 51.5
SGA_v2.0_scaffold170G38822 Striga asiatica HOM05D003851 ORTHO05D005657 1.7e-93 347.1 393 52.9
Cc11_g09150 Coffea canephora HOM05D003851 ORTHO05D005657 2.9e-93 346.3 419 51.1
TWI31G1382 Tripterygium wilfordii HOM05D003851 ORTHO05D005657 3.8e-93 345.9 425 50.4
GSVIVG01011794001 Vitis vinifera HOM05D003851 ORTHO05D005657 5.0e-93 345.5 407 50.6
PGR102G1971 Punica granatum HOM05D003851 ORTHO05D005657 6.5e-93 345.1 428 49.8
SalBow8G1489 Salvia bowleyana HOM05D003851 ORTHO05D005657 1.1e-92 344.4 442 48.9
Actinidia14940 Actinidia chinensis HOM05D003851 ORTHO05D005657 1.4e-92 344.0 452 48.7
Actinidia36692 Actinidia chinensis HOM05D003851 ORTHO05D005657 3.2e-92 342.8 417 51.1
Aa31LG1G30 Aethionema arabicum HOM05D003851 ORTHO05D005657 9.3e-92 341.3 415 51.6
Manes.14G136300 Manihot esculenta HOM05D003851 ORTHO05D005657 9.3e-92 341.3 409 50.1
CAN.G822.7 Capsicum annuum HOM05D003851 ORTHO05D005657 1.6e-91 340.5 390 52.3
FvH4_4g26260 Fragaria vesca HOM05D003851 ORTHO05D005657 4.6e-91 339.0 413 49.9
FAN12G1256 Fragaria x ananassa HOM05D003851 ORTHO05D005657 4.6e-91 339.0 413 49.9
FAN12G3131 Fragaria x ananassa HOM05D003851 ORTHO05D005657 4.6e-91 339.0 413 49.9
THA.LOC104805047 Tarenaya hassleriana HOM05D003851 ORTHO05D005657 4.6e-91 339.0 410 49.3
FAN07G1894 Fragaria x ananassa HOM05D003851 ORTHO05D005657 3.0e-90 336.3 415 49.2
Hund25010 Selenicereus undatus HOM05D003851 ORTHO05D005657 3.0e-90 336.3 507 44.8
FAN17G0190 Fragaria x ananassa HOM05D003851 ORTHO05D005657 3.9e-90 335.9 411 49.6
Zm00001eb044760 Zea mays HOM05D003851 ORTHO05D005657 5.1e-90 335.5 409 49.9
Thhalv10006787m.g Eutrema salsugineum HOM05D003851 ORTHO05D005657 3.3e-89 332.8 411 50.4
Lj3A876T45 Lonicera japonica HOM05D003851 ORTHO05D005657 4.3e-89 332.4 440 47.3
HanXRQChr12g0377711 Helianthus annuus HOM05D003851 ORTHO05D005657 7.4e-89 331.6 423 48.9
CAN.G1489.5 Capsicum annuum HOM05D003851 ORTHO05D005657 9.7e-89 331.3 420 49.8
Cfa015793 Carpinus fangiana HOM05D003851 ORTHO05D005657 1.3e-88 330.9 420 50.2
EL10Ac6g14256 Beta vulgaris HOM05D003851 ORTHO05D005657 2.2e-88 330.1 440 46.8
Haze_00700 Corylus avellana HOM05D003851 ORTHO05D005657 2.2e-88 330.1 419 49.9
HPP92_013139 Vanilla planifolia HOM05D003851 ORTHO05D005657 2.8e-88 329.7 407 48.2
THA.LOC104824160 Tarenaya hassleriana HOM05D003851 ORTHO05D005657 6.3e-88 328.6 414 47.8
Carub.0001s1490 Capsella rubella HOM05D003851 ORTHO05D005657 1.1e-87 327.8 331 57.1
ECA234G0471 Erigeron canadensis HOM05D003851 ORTHO05D005657 1.1e-87 327.8 430 47.7
RcHm_v2.0_Chr4g0433861 Rosa chinensis HOM05D003851 ORTHO05D005657 1.8e-87 327.0 317 57.4
A06p11140 Brassica napus HOM05D003851 ORTHO05D005657 2.4e-87 326.6 430 49.5
vmacro10621 Vaccinium macrocarpon HOM05D003851 ORTHO05D005657 3.1e-87 326.2 435 48.3
CiPaw.05G246300 Carya illinoinensis HOM05D003851 ORTHO05D005657 6.9e-87 325.1 378 52.9
BcaB02g06581 Brassica carinata HOM05D003851 ORTHO05D005657 1.5e-86 323.9 370 53.2
Sp1g13470 Schrenkiella parvula HOM05D003851 ORTHO05D005657 2.0e-86 323.6 368 53.0
Sopen05g004260 Solanum pennellii HOM05D003851 ORTHO05D005657 2.6e-86 323.2 421 48.2
Peaxi162Scf00205g00924 Petunia axillaris HOM05D003851 ORTHO05D005657 3.4e-86 322.8 397 51.4
Lalb_Chr02g0145581 Lupinus albus HOM05D003851 ORTHO05D005657 4.5e-86 322.4 320 56.9
AUR62014128 Chenopodium quinoa HOM05D003851 ORTHO05D005657 5.9e-86 322.0 327 55.7
AL1G27200 Arabidopsis lyrata HOM05D003851 ORTHO05D005657 1.3e-85 320.9 363 53.4
AT1G15130 Arabidopsis thaliana HOM05D003851 ORTHO05D005657 1.3e-85 320.9 390 51.8
BcaC05g25444 Brassica carinata HOM05D003851 ORTHO05D005657 1.7e-85 320.5 335 55.2
Oeu062877.3 Olea europaea HOM05D003851 ORTHO05D005657 2.2e-85 320.1 439 47.8
BcaB03g14554 Brassica carinata HOM05D003851 ORTHO05D005657 5.0e-85 318.9 368 51.9
Actinidia15239 Actinidia chinensis HOM05D003851 ORTHO05D005657 1.4e-84 317.4 310 57.1
C05p13260 Brassica napus HOM05D003851 ORTHO05D005657 1.4e-84 317.4 315 56.8
BolC5t30063H Brassica oleracea HOM05D003851 ORTHO05D005657 1.4e-84 317.4 315 56.8
BcaNung05516 Brassica carinata HOM05D003851 ORTHO05D005657 1.6e-83 313.9 368 50.8
BolC8t52062H Brassica oleracea HOM05D003851 ORTHO05D005657 1.6e-83 313.9 368 50.8
C08p45140 Brassica napus HOM05D003851 ORTHO05D005657 2.1e-83 313.5 368 50.8
SEGI_09716 Sequoiadendron giganteum HOM05D003851 ORTHO05D005657 2.7e-83 313.2 386 48.7
Os10g0495300 Oryza sativa ssp. japonica HOM05D003851 ORTHO05D005657 3.6e-83 312.8 434 45.6
Dinv16173 Davidia involucrata HOM05D003851 ORTHO05D005657 1.4e-82 310.8 376 52.4
AUR62039549 Chenopodium quinoa HOM05D003851 ORTHO05D005657 1.8e-82 310.5 436 45.2
ECA233G2027 Erigeron canadensis HOM05D003851 ORTHO05D005657 4.3e-81 305.8 409 46.9
HanXRQChr17g0567071 Helianthus annuus HOM05D003851 ORTHO05D005657 5.7e-81 305.4 451 43.2
A09p61550 Brassica napus HOM05D003851 ORTHO05D005657 1.7e-80 303.9 372 50.0
BraA09t41528Z Brassica rapa HOM05D003851 ORTHO05D005657 3.7e-80 302.8 372 49.7
Solyc05g008430.4 Solanum lycopersicum HOM05D003851 ORTHO05D005657 5.3e-79 298.9 422 46.0
CARHR015650 Cardamine hirsuta HOM05D003851 ORTHO05D005657 9.1e-79 298.1 410 47.1
Zm00001eb221160 Zea mays HOM05D003851 ORTHO05D005657 3.4e-78 296.2 424 45.3
Mapoly0004s0114 Marchantia polymorpha HOM05D003851 ORTHO05D005657 1.0e-77 294.7 433 44.3
BraA06t24294Z Brassica rapa HOM05D003851 ORTHO05D005657 5.5e-76 288.9 430 46.5
Lsat_1_v5_gn_8_41561 Lactuca sativa HOM05D003851 ORTHO05D005657 5.5e-76 288.9 267 56.6
Lsat_1_v5_gn_4_15461 Lactuca sativa HOM05D003851 ORTHO05D005657 8.8e-74 281.6 422 43.1
Pp3c24_13730 Physcomitrium patens HOM05D003851 ORTHO05D005657 5.3e-71 272.3 401 41.6
DCAR_023618 Daucus carota HOM05D003851 ORTHO05D005657 1.6e-70 270.8 397 45.1
SMO141G0055 Selaginella moellendorffii HOM05D003851 ORTHO05D005657 2.9e-69 266.5 375 43.5
AagrBONN_evm.TU.Sc2ySwM_340.388 Anthoceros agrestis HOM05D003851 ORTHO05D005657 3.2e-68 263.1 429 42.4
Pp3c8_14930 Physcomitrium patens HOM05D003851 ORTHO05D005657 8.0e-67 258.5 370 43.2
unitig_699.g19528 Utricularia gibba HOM05D003851 ORTHO05D005657 3.1e-63 246.5 229 57.2
Psat6g222920 Pisum sativum HOM05D003851 ORTHO05D005657 7.7e-54 215.3 194 60.8
CDE04G2900 Ceratophyllum demersum HOM05D003851 ORTHO05D130495 9.4e-52 208.4 333 43.5
Sc11g0003990 Simmondsia chinensis HOM05D003851 ORTHO05D005657 9.4e-52 208.4 194 57.7
ECA233G2539 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.7e-51 206.1 179 60.3
arahy.Tifrunner.gnm1.ann1.N6SBJA Arachis hypogaea HOM05D003851 ORTHO05D005657 1.8e-50 204.1 336 44.0
EL10Ac4g09588 Beta vulgaris HOM05D003851 ORTHO05D005657 3.3e-44 183.3 213 51.6
Oeu064205.1 Olea europaea HOM05D003851 ORTHO05D005657 4.7e-43 179.5 178 55.6
CBR_g20272 Chara braunii HOM05D003851 ORTHO05D005657 2.9e-40 170.2 342 36.3
Dinv04890 Davidia involucrata HOM05D003851 ORTHO05D005657 3.5e-38 163.3 178 53.9
CDE07G1409 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 4.4e-33 146.4 170 52.4
QL01p041527 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-29 133.3 167 50.3
CDE07G0047 Ceratophyllum demersum HOM05D003851 ORTHO05D130129 6.8e-26 122.5 97 64.9
HanXRQChr02g0041951 Helianthus annuus HOM05D003851 ORTHO05D023759 8.9e-26 122.1 128 49.2
FAN22G1865 Fragaria x ananassa HOM05D003851 ORTHO05D005657 1.1e-23 115.2 79 68.4
Hma1.2p1_2619F.1_g325550 Hydrangea macrophylla HOM05D003851 ORTHO05D228202 7.8e-22 109.0 71 73.2
Hma1.2p1_2029F.1_g311720 Hydrangea macrophylla HOM05D003851 ORTHO05D228069 1.2e-19 101.7 102 55.9
CDE04G3287 Ceratophyllum demersum HOM05D003851 ORTHO05D129687 2.6e-17 94.0 143 43.4
Cre01.g004350 Chlamydomonas reinhardtii HOM05D003851 ORTHO05D005657 4.1e-15 86.7 264 23.9
MCO15G191 Micromonas commoda HOM05D003851 ORTHO05D005657 1.6e-14 84.7 239 26.4
ECA234G1408 Erigeron canadensis HOM05D003851 ORTHO05D005657 1.3e-13 81.6 121 38.0
QL11p038845 Quercus lobata HOM05D000176 ORTHO05D000106 6.6e-13 79.3 90 54.4
FAN07G0165 Fragaria x ananassa HOM05D003851 ORTHO05D023759 9.6e-12 75.5 48 70.8
PRCOL_00001562 Prasinoderma coloniale HOM05D003851 ORTHO05D005657 4.9e-08 63.2 276 24.3
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 7.1e-07 59.3 85 43.5
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 7.1e-07 59.3 85 43.5


User provided reference genes

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