Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 0.0e+00 1540.8 782 100.0
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.7e-292 1009.2 630 84.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 6.5e-260 901.0 800 62.8
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.8e-258 895.6 827 59.5
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 2.3e-257 892.5 789 61.2
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.9e-255 884.8 820 59.9
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.6e-250 869.8 798 58.9
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 4.7e-250 868.2 811 58.4
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 4.0e-249 865.1 812 59.1
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 6.8e-249 864.4 816 58.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 2.6e-248 862.4 797 58.6
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 3.4e-248 862.1 795 58.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.9e-247 859.0 810 58.3
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 8.3e-247 857.4 771 59.9
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 3.5e-245 852.0 798 57.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.5e-243 846.7 771 59.5
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.6e-242 843.2 801 58.1
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.8e-242 842.4 815 57.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 3.6e-242 842.0 812 57.1
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.4e-240 835.1 829 54.9
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.9e-239 832.4 800 57.5
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.4e-238 829.3 819 56.4
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 7.0e-238 827.8 814 56.5
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 9.2e-238 827.4 795 57.2
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 4.6e-237 825.1 816 55.8
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 3.9e-236 822.0 796 57.4
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 5.1e-236 821.6 798 57.1
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.5e-235 819.3 815 55.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.3e-235 818.5 821 55.2
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 7.3e-235 817.8 798 57.0
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 4.7e-234 815.1 821 55.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.3e-233 812.8 821 55.1
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 5.2e-233 811.6 801 57.4
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.4e-232 808.9 818 54.0
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 3.4e-232 808.9 802 55.2
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 5.8e-232 808.1 828 55.1
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 5.8e-232 808.1 805 54.7
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 5.8e-232 808.1 805 55.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 7.5e-232 807.7 815 54.4
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.3e-231 807.0 795 56.9
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.2e-231 806.2 795 56.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 2.9e-231 805.8 799 55.7
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 8.3e-231 804.3 818 54.6
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.9e-230 803.1 795 56.7
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.9e-230 803.1 795 56.9
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.9e-230 803.1 820 54.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.9e-230 803.1 820 56.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 3.2e-230 802.4 814 55.8
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 3.2e-230 802.4 794 55.9
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 9.2e-230 800.8 801 55.7
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.2e-229 800.4 813 55.8
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.7e-229 799.3 819 55.7
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.3e-228 796.2 792 56.3
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 8.6e-228 794.3 808 55.4
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.6e-227 791.6 844 54.0
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 8.9e-225 784.3 801 53.7
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 2.0e-224 783.1 791 54.5
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 7.6e-224 781.2 801 54.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 6.4e-223 778.1 790 55.4
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.1e-222 777.3 793 53.8
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.9e-222 776.5 794 54.9
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 3.5e-221 772.3 803 53.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 6.6e-220 768.1 789 54.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 8.7e-220 767.7 831 54.0
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.3e-219 765.4 810 54.0
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 7.3e-219 764.6 804 53.5
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 4.7e-218 761.9 792 54.7
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 6.2e-218 761.5 792 54.7
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 8.1e-218 761.1 803 53.4
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.1e-217 760.8 796 52.8
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 6.9e-217 758.1 817 53.2
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 2.6e-216 756.1 783 54.3
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 5.8e-216 755.0 797 52.7
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 5.8e-216 755.0 766 54.8
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.6e-216 754.6 799 53.6
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 7.6e-216 754.6 709 57.5
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.2e-215 753.1 797 53.6
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 2.7e-213 746.1 816 52.6
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 4.6e-213 745.3 793 53.2
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 4.6e-213 745.3 795 51.9
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 6.0e-213 745.0 798 51.8
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.1e-211 740.7 802 52.1
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.3e-210 737.3 797 51.8
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.6e-210 736.9 798 52.4
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 4.8e-210 735.3 802 53.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 8.1e-210 734.6 808 52.7
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.8e-209 733.4 814 51.8
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.2e-208 730.7 798 51.5
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 3.4e-208 729.2 805 53.2
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 3.4e-208 729.2 805 53.2
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 3.4e-208 729.2 805 53.2
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 7.6e-208 728.0 798 51.8
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.1e-206 724.2 812 52.0
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.6e-205 720.3 798 51.4
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 3.7e-194 682.6 802 50.5
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 9.0e-193 677.9 625 59.8
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 2.0e-192 676.8 788 50.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 4.5e-168 595.9 455 65.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 4.2e-166 589.3 837 43.8
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 9.7e-163 578.2 664 49.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-162 577.4 664 49.4
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.7e-152 543.5 469 61.0
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.9e-151 540.0 474 59.3
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 6.5e-151 538.9 457 60.6
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 4.4e-147 526.2 484 58.1
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 4.4e-147 526.2 484 58.1
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 2.4e-145 520.4 462 58.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 9.1e-145 518.5 468 57.5
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.3e-143 514.6 462 57.4
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.3e-143 513.8 462 57.8
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.2e-142 508.8 458 59.2
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.6e-139 500.4 452 59.1
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 2.2e-138 497.3 452 58.2
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.9e-138 496.1 452 56.9
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.1e-137 495.0 459 56.6
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.2e-136 491.5 452 57.3
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 5.9e-136 489.2 452 57.3
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.1e-134 485.0 447 57.3
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 3.4e-131 473.4 736 40.5
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.2e-129 466.8 471 56.1
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.6e-128 464.5 412 59.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.0e-128 464.2 485 53.6
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 7.8e-128 462.2 454 54.8
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 4.0e-124 449.9 747 40.0
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 8.3e-122 442.2 697 40.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.4e-121 440.7 447 52.6
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.4e-121 440.7 447 53.9
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.1e-121 439.9 573 44.5
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 9.2e-121 438.7 447 53.0
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 3.5e-120 436.8 447 53.2
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 4.6e-120 436.4 447 53.2
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 6.6e-119 432.6 527 48.8
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 8.1e-117 425.6 462 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.1e-113 413.3 768 36.8
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-108 397.9 298 66.8
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.6e-104 384.8 455 49.2
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.9e-103 380.2 676 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.0e-95 355.5 467 45.2
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.8e-90 337.0 274 65.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 7.9e-88 329.3 313 55.3
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-84 318.2 231 72.7
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.2e-81 307.4 631 36.6
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.4e-68 265.4 197 70.1
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.2e-59 235.7 365 38.9
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.8e-55 221.9 725 27.6
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.2e-49 199.9 145 69.7
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.2e-49 199.9 145 69.7
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.0e-47 196.1 146 62.3
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 2.4e-44 184.9 460 30.2
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.4e-39 169.1 146 59.6
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.8e-39 168.7 377 36.1
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 6.3e-37 160.2 146 55.5
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-26 125.6 90 61.1
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.3e-17 94.7 90 56.7
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 5.4e-12 77.4 108 39.8
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.1e-08 65.5 54 55.6
SEGI_14927 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 2.1e-08 65.5 48 66.7


User provided reference genes

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