Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 0.0e+00 2492.2 1343 100.0
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 0.0e+00 1810.4 1152 82.9
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 3.4e-131 474.2 924 43.4
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 4.6e-120 437.2 885 43.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 5.6e-118 430.3 876 43.4
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.3e-117 429.1 946 40.4
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 2.8e-117 427.9 867 43.8
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.1e-112 411.8 791 44.5
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 5.1e-111 407.1 895 41.1
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.3e-109 402.5 820 42.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 1.6e-109 402.1 884 40.3
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 1.4e-108 399.1 821 41.9
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 6.9e-108 396.7 902 42.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 9.0e-108 396.4 935 39.4
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.5e-107 395.6 910 39.2
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.6e-107 394.8 814 41.4
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 1.7e-106 392.1 759 43.7
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 3.8e-106 391.0 762 43.6
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.9e-105 388.7 913 41.5
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.9e-105 388.7 927 39.2
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 4.2e-105 387.5 965 38.3
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.2e-104 386.0 808 41.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.7e-103 380.2 903 38.6
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 6.7e-103 380.2 791 42.7
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 8.7e-103 379.8 767 43.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 8.7e-103 379.8 826 41.0
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.5e-102 379.0 903 38.5
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.9e-102 378.6 795 43.1
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 7.4e-102 376.7 925 39.1
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 9.6e-102 376.3 868 39.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.1e-101 375.2 883 39.8
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 4.8e-101 374.0 936 38.4
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 4.8e-101 374.0 1028 36.4
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 6.2e-101 373.6 832 35.5
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 6.2e-101 373.6 783 41.5
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 8.2e-101 373.2 780 44.7
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.4e-100 372.5 831 39.7
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.4e-100 371.7 904 38.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.0e-100 370.9 904 38.2
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 6.9e-100 370.2 840 41.0
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 6.9e-100 370.2 868 38.7
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 9.0e-100 369.8 1014 38.2
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.6e-99 368.2 792 42.4
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 4.5e-99 367.5 838 40.2
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.9e-98 364.8 1053 36.2
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 5.0e-98 364.0 844 40.9
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 6.5e-98 363.6 791 42.9
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 6.5e-98 363.6 801 43.7
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.9e-97 362.1 816 40.9
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 5.5e-97 360.5 1030 36.8
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-96 359.4 785 42.7
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.5e-96 357.8 864 39.5
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 7.9e-96 356.7 898 39.0
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 7.9e-96 356.7 782 42.6
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 3.0e-95 354.8 805 40.0
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.0e-95 354.8 903 37.5
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 3.9e-95 354.4 1116 36.2
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 3.9e-95 354.4 934 38.2
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.5e-94 352.4 579 47.0
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.5e-94 351.7 906 37.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 6.3e-93 347.1 737 41.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.4e-92 345.9 771 41.4
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 4.1e-92 344.4 732 42.3
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 6.9e-92 343.6 844 37.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 4.5e-91 340.9 1083 35.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.3e-90 339.3 480 53.5
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 2.9e-90 338.2 815 38.5
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 8.5e-90 336.7 747 44.2
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.4e-89 335.9 774 39.7
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.9e-89 335.5 775 39.2
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.9e-89 335.5 867 32.3
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.9e-89 335.5 906 37.1
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.5e-89 335.1 776 39.6
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 4.6e-88 330.9 1052 34.4
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.1e-86 326.2 763 39.7
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 3.3e-86 324.7 754 38.6
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 4.3e-86 324.3 897 38.8
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 4.8e-85 320.9 813 40.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.4e-84 318.5 829 39.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.2e-83 316.2 760 40.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.5e-83 315.8 708 40.7
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.0e-83 315.5 756 39.8
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 2.0e-83 315.5 710 40.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.6e-83 315.1 895 35.6
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 7.7e-83 313.5 680 37.1
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.3e-82 312.8 676 41.0
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.3e-82 312.8 676 41.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 3.8e-82 311.2 829 39.2
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 2.5e-81 308.5 771 37.7
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 5.5e-81 307.4 967 35.4
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.7e-80 305.1 497 49.3
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 7.9e-80 303.5 896 34.5
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 5.0e-74 284.3 946 33.6
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.1e-73 283.1 1144 31.6
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.5e-73 282.7 613 37.0
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.5e-73 280.8 603 36.5
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 6.7e-71 273.9 568 37.9
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.6e-67 261.9 1118 31.8
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.5e-67 261.2 490 38.6
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 7.7e-67 260.4 760 36.1
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 7.2e-65 253.8 751 35.2
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-62 245.7 978 32.5
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.4e-60 238.8 760 34.3
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 7.0e-60 237.3 316 55.4
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.2e-59 236.5 849 33.8
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.2e-59 236.5 842 31.5
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 7.7e-59 233.8 977 33.0
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 6.1e-56 224.2 721 36.2
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 6.1e-56 224.2 594 40.2
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.2e-53 215.7 606 38.8
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 6.3e-53 214.2 238 51.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 2.0e-43 182.6 351 44.4
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 7.8e-43 180.6 284 50.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.8e-40 172.2 704 30.7
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 2.0e-35 156.0 738 31.6
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.9e-29 135.6 191 42.9
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.3e-25 121.7 120 55.8
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.3e-23 115.9 469 29.6
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.7e-21 108.6 447 29.1
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 7.1e-20 104.4 65 73.8
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 3.5e-19 102.1 773 30.4
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 2.3e-18 99.4 158 36.7
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.2e-16 93.6 141 41.1
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 5.2e-15 88.2 829 22.4
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 2.0e-14 86.3 141 35.5
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.7e-11 75.9 139 35.3
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-10 73.2 86 52.3
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 3.0e-10 72.4 131 36.6
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 3.6e-08 65.5 142 30.3
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.8e-08 65.1 105 41.0
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 9.9e-06 57.4 123 34.1


User provided reference genes

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