Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 0.0e+00 2130.1 1231 100.0
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 0.0e+00 1445.3 1264 67.6
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.2e-204 718.0 1454 41.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.1e-204 717.2 1453 43.0
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.3e-198 697.2 1445 41.2
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.3e-197 693.0 1434 40.9
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 5.6e-197 692.6 1410 40.2
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 2.9e-193 680.2 1460 40.0
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.4e-192 677.9 1417 40.4
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 2.7e-191 673.7 1408 40.3
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 3.9e-190 669.8 1452 39.5
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.3e-189 666.8 1431 39.9
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 7.3e-189 665.6 1450 41.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 9.5e-189 665.2 1447 40.5
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 9.5e-189 665.2 1470 39.7
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.5e-186 657.9 1414 39.7
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.9e-186 655.2 1410 39.9
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.9e-186 655.2 1409 40.0
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 2.2e-185 654.1 1536 38.6
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 8.3e-185 652.1 1411 39.8
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 8.3e-185 652.1 1409 40.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.2e-184 650.2 1449 40.4
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 4.1e-184 649.8 1430 39.8
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 4.1e-184 649.8 1400 40.4
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 5.4e-184 649.4 1474 39.9
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.2e-183 648.3 1445 37.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 2.1e-183 647.5 1429 39.1
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 3.5e-183 646.7 1407 38.8
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 6.0e-183 646.0 1363 41.2
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.3e-182 644.8 1474 40.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 5.1e-182 642.9 1512 39.7
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.5e-181 641.3 1505 38.9
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 1.9e-181 641.0 1394 40.2
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 5.6e-181 639.4 1436 39.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 5.6e-181 639.4 1446 39.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 2.8e-180 637.1 1442 40.1
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.4e-179 634.0 1432 39.4
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.1e-179 633.6 1480 38.5
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.6e-178 630.6 1432 39.0
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 7.6e-178 629.0 1428 39.2
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.4e-176 624.8 1434 39.0
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.4e-176 624.8 1436 38.8
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 1.9e-176 624.4 1478 37.8
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 5.4e-176 622.9 1444 39.9
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.6e-175 621.3 1265 41.7
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 2.1e-175 620.9 1471 38.8
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 3.5e-175 620.2 1475 38.6
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 4.3e-173 613.2 1417 39.6
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 4.7e-172 609.8 1420 39.9
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.4e-171 608.2 1407 38.6
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 9.0e-171 605.5 1331 38.3
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 3.4e-170 603.6 1417 40.6
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 9.9e-170 602.1 1467 37.8
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.9e-169 600.5 1487 37.4
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.4e-168 598.2 1398 39.1
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 2.4e-168 597.4 1161 41.6
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 9.3e-168 595.5 1294 40.1
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 1.2e-167 595.1 1388 39.0
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 2.7e-167 594.0 1450 38.4
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.7e-166 591.3 1293 40.4
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.9e-165 587.8 1513 37.0
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 6.9e-163 579.3 1527 36.3
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 9.0e-163 578.9 1413 40.1
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 9.0e-163 578.9 1387 37.6
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 3.4e-162 577.0 1427 38.8
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.1e-159 567.8 1411 40.3
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.7e-159 567.4 1066 41.7
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.8e-158 564.7 1423 36.7
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.9e-157 561.2 1520 36.4
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 8.1e-156 555.8 1209 40.7
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.1e-155 555.4 1520 34.7
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 6.4e-153 546.2 1395 37.3
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 8.4e-153 545.8 1421 37.2
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 5.1e-150 536.6 1298 37.4
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.1e-149 535.4 1386 38.7
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.5e-149 535.0 1379 39.4
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 4.3e-149 533.5 1373 37.7
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 7.4e-149 532.7 1428 37.2
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 2.1e-148 531.2 1370 38.2
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 4.8e-148 530.0 1412 37.7
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.4e-147 527.7 1449 35.7
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 2.0e-146 524.6 1334 39.1
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.0e-145 522.3 1337 39.3
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.3e-145 521.9 1472 37.4
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.1e-144 518.8 1463 35.3
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 3.2e-144 517.3 1342 39.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.7e-143 514.2 1396 37.9
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 6.0e-143 513.1 1439 35.5
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.0e-142 510.8 1323 38.5
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.0e-142 510.8 1323 38.5
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 3.9e-142 510.4 743 48.7
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.5e-141 508.4 1348 36.9
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 9.0e-139 499.2 1343 38.7
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 6.5e-137 493.0 1653 33.3
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.9e-136 491.5 1229 39.6
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 2.6e-130 471.1 1412 36.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.1e-123 449.1 1200 36.5
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 4.5e-122 443.7 1158 36.5
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 8.5e-121 439.5 1393 35.1
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 1.9e-120 438.3 1322 34.9
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.5e-104 385.6 974 34.2
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 3.3e-96 357.8 1160 31.1
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.4e-86 325.9 840 41.1
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.0e-85 322.0 861 30.9
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.1e-83 316.2 1299 29.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.3e-80 303.5 615 38.2
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-79 302.0 600 45.2
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 9.8e-77 293.1 1200 30.8
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.4e-75 288.5 822 30.7
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 3.2e-75 288.1 832 30.3
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.1e-72 279.6 834 30.5
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.9e-64 252.3 889 28.6
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.5e-56 226.1 285 41.1
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.2e-53 216.5 775 30.6
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.6e-47 196.1 404 38.6
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.3e-36 159.8 480 30.0
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 4.9e-36 157.9 222 43.2
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.5e-32 146.4 652 28.8
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.6e-26 126.3 172 39.5
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 8.7e-25 120.6 254 39.4
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.1e-24 120.2 93 60.2
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.9e-24 119.4 147 48.3
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.1e-22 113.6 666 25.5
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.4e-22 113.2 295 37.3
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.0e-20 107.1 349 30.7
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.1e-19 103.6 64 76.6
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.6e-18 99.8 257 35.4
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 2.7e-18 99.0 310 27.1
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.8e-17 94.0 273 32.6
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 8.8e-17 94.0 66 60.6
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.7e-16 90.5 108 46.3
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.3e-15 90.1 125 43.2
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.6e-13 82.4 110 50.0
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 8.5e-12 77.4 67 52.2
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.5e-12 77.4 50 64.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 9.4e-11 73.9 69 56.5
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.7e-10 71.6 82 47.6
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 5.1e-09 68.2 51 62.7
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 5.7e-08 64.7 48 54.2


User provided reference genes

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