Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.8e-146 521.9 263 100.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.4e-121 439.9 248 87.9
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.2e-120 436.8 248 86.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 4.9e-119 431.4 248 85.5
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 6.5e-119 431.0 248 84.7
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.1e-118 430.3 248 84.7
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 3.2e-118 428.7 248 84.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 4.2e-118 428.3 248 85.1
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.5e-118 427.9 248 85.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 7.1e-118 427.6 248 83.9
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.1e-118 427.6 248 83.9
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.6e-117 426.4 248 83.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.7e-117 425.6 248 83.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.5e-117 425.2 248 83.9
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 6.0e-117 424.5 239 86.2
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 7.9e-117 424.1 239 86.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 7.9e-117 424.1 248 83.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.0e-116 423.7 248 83.1
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.0e-116 423.7 241 86.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.3e-116 423.3 242 84.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 5.1e-116 421.4 248 83.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.1e-116 421.4 248 83.5
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 8.7e-116 420.6 239 87.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 8.7e-116 420.6 241 85.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.1e-115 420.2 248 82.7
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.3e-115 418.7 249 83.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.3e-115 418.7 248 82.7
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 5.7e-115 417.9 242 83.1
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 5.7e-115 417.9 240 85.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.7e-115 417.9 240 85.8
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 5.7e-115 417.9 253 82.2
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 7.4e-115 417.5 249 82.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 9.6e-115 417.2 248 81.9
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 9.6e-115 417.2 242 83.5
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-114 416.8 241 85.1
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.3e-114 416.8 239 84.9
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.6e-114 416.4 249 81.9
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-114 416.4 242 82.2
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.8e-114 415.6 242 82.2
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 2.8e-114 415.6 248 82.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 6.3e-114 414.5 248 80.6
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 6.3e-114 414.5 248 81.0
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.1e-113 413.7 249 81.5
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.1e-113 413.7 239 84.5
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.1e-113 413.7 249 82.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.1e-113 413.7 249 81.1
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.4e-113 413.3 246 80.5
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.4e-113 413.3 246 81.3
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.8e-113 412.9 246 80.5
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.8e-113 412.9 249 83.5
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.8e-113 412.9 249 83.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.8e-113 412.9 248 80.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.4e-113 412.5 246 80.1
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 2.4e-113 412.5 246 80.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 2.4e-113 412.5 247 82.2
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.4e-113 412.5 248 80.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.1e-113 412.1 249 81.1
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.1e-113 412.1 249 83.1
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-113 412.1 241 84.2
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.1e-113 411.8 248 81.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 5.3e-113 411.4 248 80.6
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 5.3e-113 411.4 248 81.0
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.9e-113 411.0 249 80.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 9.0e-113 410.6 246 79.7
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.2e-112 410.2 246 80.1
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.5e-112 409.8 246 79.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.5e-112 409.8 249 81.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.6e-112 409.1 248 83.5
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.4e-112 408.7 248 80.2
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 4.5e-112 408.3 246 79.7
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 4.5e-112 408.3 246 79.7
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 4.5e-112 408.3 246 79.7
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 4.5e-112 408.3 239 82.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 5.9e-112 407.9 249 80.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 5.9e-112 407.9 241 83.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.6e-112 407.5 246 80.1
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.0e-111 407.1 249 79.9
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-111 406.8 246 79.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.7e-111 406.4 249 79.9
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-111 406.4 249 79.9
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.2e-111 406.0 260 82.7
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.2e-111 406.0 250 82.0
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.9e-111 405.6 246 78.9
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.9e-111 405.6 246 78.9
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.0e-111 404.8 246 80.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 6.5e-111 404.4 246 80.5
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.4e-110 403.3 248 76.2
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.9e-110 402.9 244 80.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.2e-110 402.1 250 79.2
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 9.3e-110 400.6 246 77.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 9.3e-110 400.6 246 77.6
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.1e-109 399.4 243 81.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.6e-109 398.7 242 79.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.0e-108 397.1 268 74.3
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.3e-108 396.7 243 80.7
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.8e-108 396.4 249 77.9
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.5e-107 393.3 249 78.7
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.5e-107 393.3 248 77.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-107 392.9 248 76.6
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.7e-107 390.6 215 87.0
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.3e-106 390.2 247 78.9
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-106 390.2 249 76.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.3e-106 390.2 249 76.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.2e-106 389.4 250 77.6
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 4.8e-106 388.3 252 77.8
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 6.3e-106 387.9 270 75.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.2e-106 387.5 215 87.9
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.1e-105 387.1 296 67.9
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-104 383.3 304 65.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.5e-102 375.9 305 65.2
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 3.2e-102 375.6 209 84.7
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 5.7e-99 364.8 240 71.2
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 9.1e-97 357.5 196 87.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 3.6e-93 345.5 196 83.7
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 6.1e-93 344.7 303 60.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.8e-90 335.9 199 81.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.4e-89 332.8 248 68.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 9.1e-89 330.9 249 70.7
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.9e-86 323.2 248 64.1
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.7e-85 318.5 222 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.9e-79 299.3 250 58.8
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.2e-78 295.4 151 93.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.2e-78 294.7 181 82.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.4e-73 280.4 241 56.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.5e-72 275.8 151 88.7
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 4.5e-72 275.4 222 60.8
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 6.6e-63 245.0 142 81.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 7.3e-62 241.5 153 77.1
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 5.2e-60 235.3 190 56.3
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.9e-58 228.8 149 77.2
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 4.1e-57 225.7 142 78.9
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.0e-47 194.5 220 45.0
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 3.0e-47 193.0 121 76.0
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 2.5e-46 189.9 257 41.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 2.8e-37 159.8 88 84.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.1e-37 158.3 241 42.7
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.7e-32 143.3 96 70.8
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.0e-27 127.1 203 38.4
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.4e-25 120.2 111 59.5
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.4e-25 119.0 80 76.2
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.1e-24 117.1 85 62.4
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.3e-22 109.8 66 77.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.6e-21 106.3 79 60.8
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 4.5e-19 99.4 90 62.2
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.9e-17 94.0 68 61.8
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 7.9e-16 88.6 72 54.2
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 7.6e-11 72.0 53 73.6
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.7e-10 70.9 61 63.9
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.2e-10 70.5 53 71.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.6e-08 64.3 54 63.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 4.6e-08 62.8 199 27.1


User provided reference genes

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