Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.4e-224 782.7 423 100.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.5e-157 559.3 434 77.4
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.7e-103 379.0 426 52.1
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.2e-101 374.4 478 48.7
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.4e-101 372.5 431 53.4
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.3e-100 370.9 438 53.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 4.1e-99 365.9 456 49.6
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 7.7e-98 361.7 445 51.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 4.2e-96 355.9 458 49.1
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 7.2e-96 355.1 442 49.8
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 9.5e-96 354.8 465 48.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-95 354.4 428 52.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.6e-95 354.0 438 49.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.0e-94 351.3 436 49.1
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.4e-94 350.9 440 52.3
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.8e-94 350.5 455 50.5
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.3e-94 350.1 460 50.0
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.0e-94 349.7 446 49.3
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.0e-94 349.4 439 50.6
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 4.0e-94 349.4 459 49.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 4.0e-94 349.4 436 50.7
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.2e-94 349.0 457 49.0
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 8.9e-94 348.2 456 49.8
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.2e-93 347.8 451 51.7
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.5e-93 347.4 453 49.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 2.0e-93 347.1 473 48.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.6e-93 346.7 446 50.0
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-93 346.7 462 49.4
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.4e-93 346.3 427 49.6
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.4e-93 346.3 451 51.4
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.4e-93 346.3 462 49.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 3.4e-93 346.3 458 48.5
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.7e-93 345.5 480 47.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.3e-92 344.4 463 49.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 3.7e-92 342.8 440 50.0
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 6.3e-92 342.0 482 47.5
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.3e-92 342.0 460 49.3
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 8.3e-92 341.7 439 49.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.4e-91 340.9 444 49.3
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-91 340.9 449 48.8
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.8e-91 340.5 457 47.9
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.8e-91 340.5 453 49.7
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.4e-91 340.1 435 49.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.1e-91 339.7 467 46.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 5.4e-91 339.0 452 48.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.4e-91 339.0 487 44.8
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 9.2e-91 338.2 489 45.6
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.2e-90 337.8 448 48.4
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.6e-90 337.4 481 46.6
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.0e-90 337.0 440 48.2
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.5e-90 335.9 441 49.7
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 7.8e-90 335.1 482 45.4
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.9e-89 333.2 465 48.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.9e-89 333.2 440 50.0
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 5.0e-89 332.4 465 45.4
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 6.6e-89 332.0 426 48.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.5e-88 330.1 445 48.3
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 4.3e-88 329.3 494 44.7
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 7.3e-88 328.6 482 46.3
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 9.5e-88 328.2 465 46.5
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 9.5e-88 328.2 486 45.3
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.6e-87 327.4 487 45.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 2.1e-87 327.0 449 48.8
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.7e-87 325.9 483 45.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 6.1e-87 325.5 458 47.2
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.3e-86 323.6 498 44.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 3.1e-86 323.2 448 49.1
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 3.1e-86 323.2 526 42.6
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 4.0e-86 322.8 494 48.4
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 4.0e-86 322.8 518 42.5
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 8.9e-86 321.6 445 50.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.5e-85 320.9 466 45.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.5e-85 320.9 478 45.6
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.5e-85 320.9 517 42.7
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.0e-85 320.5 447 47.4
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 4.4e-85 319.3 446 49.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 9.8e-85 318.2 451 47.0
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.3e-84 317.8 463 48.8
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 4.9e-84 315.8 478 45.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 6.4e-84 315.5 441 49.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 8.3e-84 315.1 445 48.3
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.4e-83 314.3 472 46.8
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 4.1e-83 312.8 436 47.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.0e-83 312.0 419 48.0
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.0e-81 308.1 467 43.7
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.0e-81 308.1 453 47.7
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.0e-81 308.1 453 47.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.0e-81 308.1 445 47.2
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.3e-81 307.8 438 49.1
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 5.0e-81 305.8 445 45.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.5e-80 303.5 443 48.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 7.3e-80 302.0 438 47.7
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.6e-79 300.8 453 46.8
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.8e-78 297.4 472 43.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.8e-78 297.4 472 43.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 4.4e-77 292.7 461 44.0
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 5.8e-77 292.4 481 43.9
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.5e-77 292.0 464 44.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.4e-75 287.7 489 41.3
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 3.2e-75 286.6 429 46.9
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.2e-74 284.6 432 45.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.5e-74 283.1 528 40.7
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 7.8e-74 282.0 502 42.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.3e-73 280.4 175 80.0
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.9e-73 279.6 411 46.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 6.6e-73 278.9 169 82.2
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.5e-72 277.7 408 45.3
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 4.3e-72 276.2 444 42.3
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 5.6e-72 275.8 287 57.1
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.8e-71 273.5 165 81.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.8e-71 273.5 176 79.0
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.0e-69 267.3 333 49.5
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.2e-68 263.8 408 44.4
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 3.3e-64 250.0 413 42.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.0e-62 243.0 391 43.2
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.6e-61 240.4 444 41.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.7e-55 219.5 447 43.0
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 4.7e-55 219.5 382 43.5
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.8e-53 212.6 128 80.5
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.3e-49 201.4 379 41.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.5e-48 198.0 383 39.2
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.4e-46 191.4 367 39.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 9.0e-46 188.7 488 33.6
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 4.5e-45 186.4 165 61.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.5e-42 176.8 279 43.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.7e-39 166.8 339 38.6
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.5e-35 154.1 422 33.9
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.5e-35 154.1 157 51.0
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.2e-35 153.3 392 32.1
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.0e-33 148.7 157 51.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.5e-26 123.6 250 32.8
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.7e-24 116.3 321 32.1
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.1e-22 112.1 65 84.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.6e-18 98.2 97 57.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.3e-16 90.5 175 35.4
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-15 88.6 52 80.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.7e-15 88.2 52 76.9
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 4.8e-15 86.7 51 72.5
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 6.3e-15 86.3 64 70.3
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 6.3e-15 86.3 64 70.3
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-14 85.1 102 45.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-14 85.1 102 45.1
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 7.7e-13 79.3 166 38.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 5.0e-12 76.6 60 63.3
Lsat_1_v5_gn_3_34881 Lactuca sativa HOM05D000230 ORTHO05D000176 7.0e-06 56.2 111 27.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 9.1e-06 55.8 79 35.4


User provided reference genes

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