Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.3e-162 574.7 314 100.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 7.2e-117 424.5 303 82.2
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.6e-76 289.3 317 57.1
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 3.4e-74 282.7 315 58.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.7e-71 273.1 321 55.5
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.8e-67 260.4 289 55.7
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.4e-67 260.0 284 57.0
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.4e-67 260.0 313 54.0
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.1e-67 259.6 309 56.3
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 8.9e-67 258.1 325 53.5
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 8.9e-67 258.1 292 56.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.5e-66 257.3 283 59.0
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.0e-66 256.9 309 53.7
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 7.6e-66 255.0 315 55.2
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.6e-66 255.0 308 54.9
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.3e-65 254.2 308 54.9
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.9e-65 253.1 318 53.1
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.8e-65 252.7 315 53.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.1e-64 251.1 312 54.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.1e-64 251.1 321 55.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 3.2e-64 249.6 311 53.7
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 9.3e-64 248.1 321 54.5
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.2e-63 247.7 313 51.1
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.6e-63 247.3 297 55.2
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 2.1e-63 246.9 321 52.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.7e-63 246.5 321 51.1
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.5e-63 246.1 309 54.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.6e-63 245.7 318 49.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.6e-63 245.7 317 53.6
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.6e-63 245.7 315 52.4
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 4.6e-63 245.7 311 53.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 7.8e-63 245.0 318 49.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.0e-62 244.6 310 52.9
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.0e-62 244.6 294 56.8
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.3e-62 244.2 310 52.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.7e-62 243.8 304 53.3
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.7e-62 243.8 318 52.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.3e-62 243.4 318 52.2
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.0e-62 243.0 293 56.7
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 3.9e-62 242.7 318 53.5
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.9e-62 242.7 321 50.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 3.9e-62 242.7 293 55.6
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 5.1e-62 242.3 321 50.8
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.1e-61 241.1 311 53.7
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.9e-61 240.4 309 51.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.5e-61 240.0 307 53.1
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.3e-61 239.6 311 53.7
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 5.6e-61 238.8 317 52.4
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.6e-61 238.8 314 53.2
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.6e-61 238.8 314 53.2
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.6e-61 238.8 318 52.2
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 7.3e-61 238.4 290 53.1
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 7.3e-61 238.4 312 53.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 9.6e-61 238.0 318 52.2
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-60 237.3 314 50.6
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.6e-60 237.3 318 52.2
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.8e-60 236.5 290 53.8
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 4.8e-60 235.7 286 55.6
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 8.1e-60 235.0 302 54.0
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 8.1e-60 235.0 315 51.4
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.4e-59 234.2 291 52.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-59 234.2 290 53.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-59 234.2 290 53.1
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.4e-59 233.4 284 56.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-59 233.0 287 55.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.0e-59 232.6 285 55.1
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 5.3e-59 232.3 306 52.6
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 5.3e-59 232.3 306 52.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 6.9e-59 231.9 287 54.7
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.0e-59 231.5 307 51.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-58 230.7 290 53.1
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.5e-58 230.7 285 55.4
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.5e-58 230.7 279 53.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.0e-58 230.3 309 52.4
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.6e-58 229.9 311 52.1
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.6e-58 229.9 318 51.9
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 3.4e-58 229.6 283 52.7
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 4.4e-58 229.2 305 50.5
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 4.4e-58 229.2 286 51.0
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 9.9e-58 228.0 309 51.5
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 9.9e-58 228.0 287 54.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.3e-57 227.6 294 52.0
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.3e-57 227.6 306 52.6
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.7e-57 227.3 293 53.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.7e-57 227.3 276 55.4
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 2.2e-57 226.9 314 51.0
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.9e-57 226.5 294 51.7
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 8.4e-57 224.9 288 53.8
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.4e-57 224.9 284 53.9
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.4e-57 224.9 282 55.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.4e-56 224.2 288 53.1
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.4e-56 223.4 281 53.0
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 3.2e-56 223.0 285 53.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 4.2e-56 222.6 287 53.3
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.2e-56 222.6 310 51.9
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 5.4e-56 222.2 281 54.1
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 7.1e-56 221.9 293 52.9
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 9.3e-56 221.5 286 53.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 9.3e-56 221.5 287 51.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.6e-55 220.7 283 53.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.1e-55 220.3 287 53.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.1e-55 220.3 309 51.1
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.5e-55 219.5 308 49.0
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.5e-55 219.5 287 52.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.6e-55 219.2 266 54.9
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.6e-55 219.2 288 52.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 4.6e-55 219.2 287 52.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.0e-55 218.8 277 52.7
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 6.0e-55 218.8 305 50.8
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.9e-55 218.4 310 49.7
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.5e-53 213.4 312 47.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.6e-53 212.2 241 55.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.6e-53 212.2 290 47.9
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 7.4e-53 211.8 296 51.7
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.1e-52 210.3 329 48.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.8e-52 209.9 295 51.9
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.1e-51 208.0 296 50.3
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.0e-51 206.1 306 48.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.2e-50 204.5 305 49.2
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.6e-50 203.4 295 48.5
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 5.8e-50 202.2 293 46.4
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.2e-49 200.3 229 50.7
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.9e-49 199.9 291 49.1
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.2e-48 196.4 308 44.5
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.6e-47 194.1 308 44.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.5e-45 186.8 271 48.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.7e-44 183.0 285 47.7
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 8.1e-44 181.8 310 45.5
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.1e-43 181.4 328 41.8
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.2e-40 169.9 296 46.3
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 3.1e-35 153.3 235 45.5
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 9.0e-35 151.8 296 39.5
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-32 144.1 161 52.2
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.5e-32 142.5 328 38.1
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 3.0e-30 136.7 308 38.3
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 4.8e-28 129.4 311 37.3
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 6.9e-27 125.6 276 40.9
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 6.9e-27 125.6 276 40.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.9e-25 120.2 277 39.4
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-24 118.2 309 40.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 2.7e-23 113.6 212 41.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.8e-20 102.8 149 53.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-19 101.7 175 42.9
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.4e-19 100.5 132 50.0
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.6e-18 97.1 253 28.9
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.1e-15 85.9 129 45.7
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.3e-14 84.0 107 45.8
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 5.7e-13 79.3 307 33.9
ATR0584G245 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.6e-10 71.2 106 53.8
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 3.5e-10 70.1 109 52.3
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.2e-09 67.4 130 40.8
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 4.7e-07 59.7 202 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.3e-06 57.4 225 27.6
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.0e-06 56.6 111 36.0


User provided reference genes

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