Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 7.2e-124 447.2 216 100.0
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.3e-93 346.7 210 79.0
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 5.0e-93 344.7 208 77.4
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.5e-92 342.4 210 78.6
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 3.2e-92 342.0 204 79.4
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 4.2e-92 341.7 208 75.5
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 5.5e-92 341.3 209 76.1
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 5.5e-92 341.3 205 76.1
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 7.2e-92 340.9 204 78.4
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 9.4e-92 340.5 204 78.4
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.2e-91 340.1 204 77.0
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.6e-91 339.7 204 76.5
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.6e-91 339.7 204 78.4
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 1.6e-91 339.7 204 77.9
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 3.6e-91 338.6 209 74.2
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.0e-90 337.0 204 76.0
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 1.8e-90 336.3 204 76.5
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 1.8e-90 336.3 204 76.5
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.8e-90 336.3 204 77.0
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 4.0e-90 335.1 208 76.4
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 5.2e-90 334.7 204 76.0
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 5.2e-90 334.7 209 76.6
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 5.2e-90 334.7 204 76.0
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.8e-90 334.3 209 74.2
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 6.8e-90 334.3 204 76.0
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.2e-89 333.6 209 75.1
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.2e-89 333.6 204 76.0
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 2.0e-89 332.8 204 76.0
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 2.0e-89 332.8 204 75.5
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 3.4e-89 332.0 210 73.8
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 3.4e-89 332.0 204 77.9
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 4.4e-89 331.6 204 75.5
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 5.7e-89 331.3 210 73.8
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 5.7e-89 331.3 204 75.5
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 7.5e-89 330.9 210 73.8
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 9.8e-89 330.5 204 75.0
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 9.8e-89 330.5 204 75.5
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 9.8e-89 330.5 204 75.0
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 1.3e-88 330.1 207 74.4
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.3e-88 330.1 209 74.6
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.3e-88 330.1 204 75.0
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 1.3e-88 330.1 204 75.0
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 1.3e-88 330.1 209 74.2
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.7e-88 329.7 207 75.8
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 1.7e-88 329.7 208 75.0
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 2.2e-88 329.3 207 73.4
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 2.2e-88 329.3 204 75.5
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 2.2e-88 329.3 204 76.5
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.8e-88 328.9 204 73.5
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 2.8e-88 328.9 209 72.2
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 2.8e-88 328.9 210 73.8
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 3.7e-88 328.6 208 72.1
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 8.3e-88 327.4 208 74.5
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.4e-87 326.6 207 72.9
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.4e-87 326.6 207 72.9
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 1.8e-87 326.2 207 73.4
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 1.8e-87 326.2 204 75.0
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.8e-87 326.2 204 75.0
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 3.1e-87 325.5 208 71.6
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 4.1e-87 325.1 210 72.9
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 7.0e-87 324.3 207 72.5
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 9.1e-87 323.9 204 73.0
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 1.6e-86 323.2 207 72.0
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.6e-86 323.2 208 70.7
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 1.6e-86 323.2 204 74.5
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 2.0e-86 322.8 204 74.5
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 2.0e-86 322.8 204 74.0
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 2.7e-86 322.4 207 72.0
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 2.7e-86 322.4 208 70.7
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 2.7e-86 322.4 204 73.5
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.5e-86 322.0 204 73.5
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 3.5e-86 322.0 207 71.5
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 3.5e-86 322.0 204 74.0
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 4.5e-86 321.6 204 73.5
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 4.5e-86 321.6 208 71.6
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 5.9e-86 321.2 210 71.4
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 7.7e-86 320.9 204 73.5
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 7.7e-86 320.9 204 73.5
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 7.7e-86 320.9 204 72.1
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 7.7e-86 320.9 208 71.2
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.0e-85 320.5 204 73.5
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.3e-85 320.1 204 71.6
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.7e-85 319.7 204 71.6
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 2.2e-85 319.3 207 71.5
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 2.2e-85 319.3 208 71.6
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 2.9e-85 318.9 209 70.8
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 5.0e-85 318.2 204 72.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 5.0e-85 318.2 204 74.0
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 6.5e-85 317.8 204 73.5
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 8.5e-85 317.4 204 72.1
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 1.9e-84 316.2 206 71.4
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 4.2e-84 315.1 204 71.1
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.2e-83 313.5 204 72.1
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 2.7e-83 312.4 209 69.9
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 2.7e-83 312.4 204 70.6
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.4e-82 310.1 213 68.1
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.8e-82 309.7 216 68.5
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 1.8e-82 309.7 210 68.6
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.0e-82 308.9 210 67.6
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 5.2e-82 308.1 210 69.5
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 1.2e-81 307.0 206 70.9
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 7.5e-81 304.3 204 70.1
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 7.5e-81 304.3 205 70.2
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 1.3e-80 303.5 208 69.2
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.3e-80 303.5 205 69.8
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 4.9e-80 301.6 209 68.4
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 1.2e-78 297.0 204 69.1
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 3.5e-78 295.4 204 67.2
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 3.8e-77 292.0 200 70.0
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.9e-76 289.7 205 68.8
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 1.6e-75 286.6 238 60.1
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.5e-73 280.0 208 63.9
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 4.4e-73 278.5 209 65.6
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 3.2e-71 272.3 204 62.7
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 5.4e-71 271.6 215 63.7
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 1.4e-66 256.9 204 61.3
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 7.5e-65 251.1 206 62.1
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.9e-63 246.5 213 59.6
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.2e-63 245.7 159 71.7
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 2.5e-60 236.1 142 76.8
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.1e-58 230.7 208 55.8
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 2.3e-58 229.6 204 57.4
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 9.8e-57 224.2 204 57.4
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.4e-55 220.3 126 83.3
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 1.5e-52 210.3 126 77.8
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 2.1e-51 206.5 214 53.3
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 6.8e-50 201.4 133 71.4
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 1.2e-49 200.7 226 49.6
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 7.6e-49 198.0 213 51.2
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 4.6e-46 188.7 111 82.9
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 3.9e-45 185.7 115 74.8
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 7.3e-44 181.4 214 50.0
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.8e-42 176.8 208 46.2
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 1.2e-38 164.1 208 43.3
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.5e-36 157.1 93 80.6
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.4e-25 119.4 209 37.8
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.8e-21 107.1 62 80.6
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 3.0e-21 106.3 92 62.0
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 1.6e-19 100.5 67 70.1
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 4.8e-19 99.0 62 71.0
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 5.8e-17 92.0 68 58.8
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 1.8e-10 70.5 52 67.3


User provided reference genes

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