Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.0e-143 511.9 277 100.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.1e-91 339.7 280 65.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 2.7e-91 339.3 283 66.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.0e-90 337.4 284 63.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.9e-89 333.2 280 66.4
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 7.3e-89 331.3 285 63.9
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.6e-88 330.1 291 62.9
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.8e-88 329.3 286 64.3
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 6.2e-88 328.2 261 67.8
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 5.3e-87 325.1 283 64.0
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 9.0e-87 324.3 284 64.1
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.6e-86 322.8 284 63.7
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.4e-86 322.4 284 63.7
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 2.2e-85 319.7 287 62.4
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 7.1e-84 314.7 287 62.7
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 9.3e-84 314.3 288 63.2
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.2e-83 313.9 287 62.0
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 2.1e-83 313.2 290 62.8
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.3e-82 310.5 271 62.7
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 6.6e-82 308.1 274 63.9
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.5e-81 307.0 245 66.9
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.1e-80 303.1 274 62.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 2.8e-80 302.8 286 60.1
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 3.6e-80 302.4 284 61.3
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.8e-79 300.1 288 60.1
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 2.6e-78 296.2 281 60.1
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.5e-78 295.4 211 79.6
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.3e-77 293.9 288 60.1
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.9e-77 292.7 270 61.1
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 8.4e-77 291.2 293 59.7
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.1e-76 290.8 294 58.2
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.4e-76 290.4 264 62.5
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.9e-76 290.0 270 61.5
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.4e-76 289.7 259 62.5
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 3.2e-76 289.3 293 59.4
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.2e-76 289.3 262 62.2
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 5.5e-76 288.5 259 62.5
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 9.3e-76 287.7 281 61.6
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 9.3e-76 287.7 278 59.4
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.7e-75 286.2 256 62.1
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.5e-75 285.8 264 61.7
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.5e-75 285.8 295 58.0
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 4.6e-75 285.4 282 58.2
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 4.6e-75 285.4 280 59.6
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 7.9e-75 284.6 261 60.2
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.3e-74 283.1 289 58.5
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.0e-74 282.7 255 60.8
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.9e-74 282.3 261 62.8
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 3.9e-74 282.3 266 62.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 5.1e-74 282.0 279 59.1
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 5.1e-74 282.0 277 59.2
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 6.7e-74 281.6 256 59.4
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 6.7e-74 281.6 268 60.8
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.1e-73 280.8 254 63.0
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.5e-73 280.4 281 59.4
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.5e-73 280.4 290 59.0
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.5e-73 280.4 264 59.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 3.3e-73 279.3 282 59.2
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 3.3e-73 279.3 261 62.8
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 3.3e-73 279.3 282 58.2
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 4.3e-73 278.9 279 58.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 5.6e-73 278.5 257 63.0
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 7.4e-73 278.1 285 58.2
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 9.6e-73 277.7 280 58.9
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.3e-72 277.3 254 60.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.6e-72 276.9 262 59.9
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-72 276.6 271 59.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.1e-72 276.6 244 63.1
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.1e-72 276.6 256 62.1
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-72 276.6 256 61.7
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 2.8e-72 276.2 276 57.6
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.8e-72 275.4 265 56.6
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.4e-71 273.1 293 55.6
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 4.0e-71 272.3 262 61.8
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.0e-71 272.3 243 62.6
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 4.0e-71 272.3 278 57.6
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 4.0e-71 272.3 284 55.3
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 5.3e-71 271.9 284 57.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.3e-71 271.9 243 62.6
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 6.9e-71 271.6 288 56.6
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 9.0e-71 271.2 255 62.4
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-70 270.8 293 56.3
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-70 270.8 243 62.1
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.5e-70 270.4 294 57.5
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.5e-70 270.4 245 62.0
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.0e-70 270.0 250 60.8
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-70 270.0 264 61.0
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.0e-70 270.0 243 62.1
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 2.6e-70 269.6 282 56.0
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.5e-70 268.9 285 57.9
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.5e-70 268.9 291 55.7
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 5.8e-70 268.5 273 58.2
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.0e-69 267.7 287 58.2
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.0e-69 267.7 259 58.7
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-69 267.3 264 60.6
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.2e-69 266.5 276 56.9
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.9e-69 265.4 285 57.9
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.9e-69 265.4 285 57.2
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.4e-69 264.6 294 53.7
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.5e-68 263.1 296 54.4
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.5e-68 263.1 286 57.7
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 4.2e-68 262.3 282 57.1
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 4.2e-68 262.3 282 57.1
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 4.2e-68 262.3 282 57.1
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 5.5e-68 261.9 261 58.2
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 7.1e-68 261.5 264 60.2
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 7.1e-68 261.5 259 59.1
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.6e-67 260.4 281 56.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 1.6e-67 260.4 246 61.4
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.6e-67 258.8 268 54.5
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.0e-67 258.5 262 55.3
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 5.1e-66 255.4 275 56.4
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.9e-65 253.4 283 55.1
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 3.3e-65 252.7 271 53.5
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.4e-62 242.7 286 53.8
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-61 240.4 278 54.3
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.8e-61 239.2 239 59.4
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 8.5e-61 238.0 247 57.1
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.5e-60 236.5 289 51.2
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.2e-60 236.1 288 52.1
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 5.5e-60 235.3 284 53.5
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 2.1e-59 233.4 284 53.2
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 6.7e-58 228.4 290 52.1
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.1e-57 227.6 231 55.4
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.5e-57 227.3 293 50.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.3e-57 226.1 273 53.8
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.3e-57 226.1 275 53.8
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 2.2e-56 223.4 272 49.6
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 2.2e-56 223.4 207 63.3
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-56 223.0 191 63.4
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.7e-56 222.6 274 52.9
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.8e-55 220.3 265 55.1
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.1e-55 219.2 280 52.9
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.2e-54 217.6 284 49.6
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.5e-54 217.2 263 49.8
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.0e-54 216.9 273 53.8
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.6e-51 206.1 242 50.0
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-46 190.7 247 48.6
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.0e-42 176.4 122 67.2
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.0e-42 176.4 285 42.1
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.1e-39 167.9 280 39.6
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.8e-39 167.2 170 63.5
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.8e-39 167.2 170 63.5
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 5.3e-39 165.6 244 41.0
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.6e-38 164.1 171 56.1
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.0e-38 163.7 124 61.3
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 3.5e-38 162.9 167 57.5
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 3.5e-38 162.9 298 40.6
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 5.0e-37 159.1 167 51.5
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.0e-37 159.1 134 62.7
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.6e-35 154.1 180 58.3
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.6e-35 154.1 282 40.1
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 1.8e-34 150.6 274 40.5
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.3e-33 146.4 187 52.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 7.5e-33 145.2 247 40.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 3.7e-32 142.9 177 48.0
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 8.2e-32 141.7 247 41.7
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.4e-31 140.2 147 51.0
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 3.2e-28 129.8 136 52.2
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.0e-26 124.8 278 35.3
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 2.3e-26 123.6 264 34.5
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.0e-26 123.2 134 55.2
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 5.7e-25 119.0 207 41.1
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.8e-21 106.3 79 68.4
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 7.2e-20 102.1 117 58.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.1e-19 99.0 72 68.1
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-18 97.8 91 63.7
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.4e-18 97.8 196 38.8
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.2e-18 95.9 75 64.0
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.2e-16 90.5 239 32.6
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.2e-15 85.1 148 46.6
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.2e-15 85.1 80 65.0
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.7e-14 83.6 102 43.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.6e-11 73.2 92 52.2
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 4.7e-11 72.8 48 70.8
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.0e-11 72.0 270 26.7
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.7e-08 64.3 73 53.4
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 2.2e-08 63.9 60 55.0
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.7e-08 63.2 269 26.8


User provided reference genes

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