Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 2.3e-304 1048.1 533 100.0
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.9e-170 603.2 545 57.6
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.3e-170 602.1 542 58.5
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 6.0e-164 581.6 545 57.1
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 6.6e-163 578.2 579 54.2
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 8.7e-163 577.8 541 56.2
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 2.6e-159 566.2 584 52.4
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 5.8e-159 565.1 580 52.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 3.8e-158 562.4 583 53.3
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.6e-156 557.0 546 56.8
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.6e-156 557.0 576 51.6
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 3.0e-155 552.7 556 53.2
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 2.5e-154 549.7 562 52.5
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.8e-153 546.2 550 52.9
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 1.5e-151 540.4 580 51.2
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.9e-150 536.2 546 52.0
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 8.4e-150 534.6 546 51.8
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 4.6e-148 528.9 587 50.9
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 2.3e-147 526.6 547 53.0
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.9e-146 523.5 550 51.1
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.6e-145 520.4 547 51.4
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 2.1e-145 520.0 553 50.1
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 2.8e-145 519.6 576 50.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.8e-144 516.9 549 50.6
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 2.4e-144 516.5 544 52.4
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 4.0e-144 515.8 545 51.7
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.6e-143 513.1 587 48.4
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 3.4e-143 512.7 543 50.8
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 4.5e-143 512.3 559 51.5
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.7e-142 510.4 550 51.6
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 3.8e-142 509.2 544 52.6
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 4.9e-142 508.8 542 51.1
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 6.5e-142 508.4 551 49.2
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.4e-141 507.3 558 51.3
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 2.5e-141 506.5 544 50.7
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.2e-141 506.1 540 51.7
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 7.1e-141 505.0 555 50.1
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.5e-140 502.7 543 51.9
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 3.5e-140 502.7 569 49.9
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 4.6e-140 502.3 573 49.6
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 7.9e-140 501.5 515 53.8
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 2.3e-139 500.0 547 50.8
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 5.1e-139 498.8 544 49.8
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.5e-138 497.3 537 50.8
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 3.7e-137 492.7 543 49.0
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 6.2e-137 491.9 547 50.6
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 9.0e-136 488.0 536 48.5
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 2.0e-135 486.9 550 48.7
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.6e-135 486.5 566 48.1
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.0e-134 484.6 533 50.3
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.0e-134 484.6 533 50.3
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 9.3e-133 478.0 577 48.0
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.2e-132 477.6 544 50.4
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.6e-132 477.2 550 47.3
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.0e-131 474.6 566 47.9
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.8e-131 473.8 616 44.8
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 6.7e-131 471.9 541 47.1
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.7e-131 471.9 538 48.9
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.5e-130 470.7 565 48.0
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 3.3e-130 469.5 541 47.9
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 4.3e-130 469.2 545 48.3
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 5.7e-130 468.8 545 49.0
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 5.7e-130 468.8 549 47.5
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.3e-129 467.6 544 47.6
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-129 467.6 638 43.6
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 2.8e-129 466.5 531 49.9
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 3.7e-129 466.1 652 42.6
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 3.7e-129 466.1 539 47.5
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.3e-129 465.3 569 48.3
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 6.3e-129 465.3 645 42.6
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.4e-128 463.4 538 48.1
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 4.1e-128 462.6 547 47.2
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.5e-127 460.7 539 47.1
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.4e-127 459.5 539 49.0
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 5.9e-127 458.8 540 47.4
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 1.0e-126 458.0 558 47.7
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.3e-126 457.6 470 52.3
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.3e-126 457.6 479 52.4
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.7e-126 457.2 523 49.3
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 6.5e-126 455.3 450 54.0
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.9e-125 453.8 438 54.6
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 3.2e-125 453.0 536 47.0
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 7.2e-125 451.8 449 52.6
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.6e-124 450.7 607 43.0
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.4e-123 447.6 550 47.8
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.0e-123 446.4 543 46.0
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.0e-123 446.4 539 47.9
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 5.1e-123 445.7 532 47.4
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 1.1e-122 444.5 532 47.2
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.5e-122 444.1 549 45.7
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 1.5e-122 444.1 537 46.4
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 2.5e-122 443.4 535 46.9
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 5.7e-122 442.2 535 46.7
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 5.7e-122 442.2 542 46.5
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 2.8e-121 439.9 626 42.2
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 6.3e-121 438.7 540 47.8
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 8.2e-121 438.3 529 46.9
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 8.2e-121 438.3 501 49.3
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.4e-120 436.8 537 47.7
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 9.1e-120 434.9 522 48.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.2e-119 434.5 550 45.6
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 5.9e-119 432.2 518 48.5
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.7e-118 430.6 548 46.0
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.7e-118 430.6 514 48.6
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 3.8e-118 429.5 515 48.3
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 6.5e-118 428.7 537 46.4
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.9e-117 427.2 544 47.8
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 3.2e-117 426.4 550 45.6
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.4e-117 424.9 537 45.4
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.4e-115 421.0 521 45.3
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 3.9e-115 419.5 553 45.4
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 3.3e-114 416.4 565 43.5
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.7e-113 412.9 554 43.0
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 4.8e-113 412.5 568 42.4
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 1.4e-112 411.0 557 43.1
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.5e-111 407.5 544 43.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.5e-111 406.4 556 43.2
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.2e-109 399.8 568 41.9
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.2e-109 399.4 573 41.2
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 7.2e-109 398.7 484 47.5
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 9.4e-109 398.3 530 45.3
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.6e-108 396.4 528 45.1
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.4e-107 394.4 461 47.7
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 7.4e-106 388.7 537 44.1
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 1.3e-105 387.9 543 44.0
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.5e-103 379.8 536 44.0
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 4.7e-100 369.4 537 42.8
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 2.8e-97 360.1 535 43.4
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 1.1e-96 358.2 544 41.4
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.8e-96 357.5 545 42.8
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 2.4e-96 357.1 548 40.3
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.1e-96 356.7 524 44.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 9.1e-96 355.1 538 41.4
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 3.5e-95 353.2 545 40.9
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.5e-93 347.1 538 39.6
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.5e-93 347.1 538 39.6
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.7e-92 342.8 548 39.4
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 2.2e-89 334.0 515 38.6
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 4.5e-87 326.2 496 42.3
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.1e-80 303.1 299 53.8
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 3.5e-79 300.1 543 35.7
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 5.0e-78 296.2 449 42.8
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.2e-76 289.3 546 38.3
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 2.0e-71 274.2 471 36.3
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 7.8e-71 272.3 308 48.1
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-64 250.8 359 43.7
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 9.2e-64 248.8 281 50.5
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 2.3e-62 244.2 338 43.2
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 5.1e-62 243.0 264 50.0
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 8.9e-59 232.3 259 48.3
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 3.2e-56 223.8 257 49.0
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 9.2e-56 222.2 230 52.2
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.4e-49 199.5 290 44.5
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 4.3e-45 186.8 249 46.2
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.8e-44 184.1 278 38.8
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 3.4e-42 177.2 561 26.7
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 9.9e-42 175.6 180 50.6
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 7.9e-39 166.0 161 47.2
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 1.9e-37 161.4 261 38.3
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 3.9e-30 137.1 150 48.7
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 1.5e-29 135.2 548 23.2
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 5.6e-29 133.3 148 49.3
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-26 125.2 250 36.0
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-26 125.2 183 38.3
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 4.9e-25 120.2 283 33.6
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 6.0e-23 113.2 107 49.5
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.5e-21 108.6 488 22.1
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.9e-21 108.2 143 41.3
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 5.7e-21 106.7 103 50.5
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.8e-19 101.7 109 53.2
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 3.4e-18 97.4 167 36.5
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 2.5e-16 91.3 135 41.5
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 5.5e-16 90.1 150 38.0
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 6.1e-15 86.7 680 21.0
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.3e-14 85.5 126 40.5
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 2.3e-14 84.7 78 50.0
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.1e-14 83.6 87 50.6
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 2.2e-12 78.2 85 49.4
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.7e-12 77.4 164 34.8
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 8.2e-12 76.3 102 43.1
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 8.2e-12 76.3 102 43.1
Prupe.7G186500 Prunus persica HOM05D003539 ORTHO05D004111 4.1e-11 73.9 97 42.3
Ciclev10010647m.g Citrus clementina HOM05D003539 ORTHO05D004111 9.0e-11 72.8 87 48.3
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 3.0e-06 57.8 61 44.3


User provided reference genes

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