Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.7e-118 428.7 219 100.0
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 6.6e-101 370.9 194 97.4
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 85.9
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 4.7e-99 364.8 218 83.5
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 6.2e-99 364.4 218 83.0
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.4e-98 363.2 218 84.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.3e-98 362.5 221 85.1
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 81.4
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.2e-97 360.1 218 82.1
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.6e-97 359.0 217 83.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.4e-97 358.6 219 83.6
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 5.8e-97 357.8 219 82.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 7.6e-97 357.5 219 82.6
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 7.6e-97 357.5 217 82.0
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 9.9e-97 357.1 218 82.1
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 82.3
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.3e-96 356.7 218 81.2
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 80.0
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 80.3
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 80.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 4.9e-96 354.8 217 80.6
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 82.1
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 6.4e-96 354.4 220 79.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.1e-95 353.6 218 80.7
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 79.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.4e-95 353.2 219 80.8
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 9.2e-95 350.5 217 79.7
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 80.2
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 80.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 80.4
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.6e-94 349.7 217 80.2
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.1e-94 349.4 216 79.6
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.7e-94 349.0 217 79.7
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 79.5
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 79.5
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 79.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 79.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 79.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 3.5e-94 348.6 217 80.6
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.4
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 4.6e-94 348.2 219 79.5
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 4.6e-94 348.2 218 78.4
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 4.6e-94 348.2 218 78.9
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.6e-94 348.2 219 79.0
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 6.0e-94 347.8 219 79.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 7.8e-94 347.4 219 79.0
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 7.8e-94 347.4 221 77.8
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.0e-93 347.1 218 81.2
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 79.0
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 79.0
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 79.0
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.3e-93 346.7 216 80.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 79.0
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.9e-93 345.1 223 80.3
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.9e-93 345.1 217 78.3
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.9e-93 345.1 217 79.7
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.9e-93 345.1 217 81.1
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 5.1e-93 344.7 217 78.8
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 5.1e-93 344.7 218 78.0
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 6.6e-93 344.4 219 77.6
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 6.6e-93 344.4 218 78.9
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.6e-93 344.4 219 79.9
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 8.6e-93 344.0 219 78.5
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 8.6e-93 344.0 232 75.4
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 8.6e-93 344.0 220 77.7
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 80.9
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 80.9
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.5e-92 343.2 218 79.8
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 78.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 79.4
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 80.8
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 79.9
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.5e-92 342.4 218 78.0
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 76.8
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 76.7
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 77.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 78.1
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 80.0
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 79.9
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 4.3e-92 341.7 217 79.3
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 7.3e-92 340.9 218 77.5
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 9.6e-92 340.5 220 76.4
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 9.6e-92 340.5 219 77.6
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 1.2e-91 340.1 217 78.3
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.2e-91 340.1 218 78.4
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.6e-91 339.7 217 77.0
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.8e-91 339.0 219 76.3
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 3.6e-91 338.6 219 76.3
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 6.2e-91 337.8 217 76.5
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 6.2e-91 337.8 217 76.5
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 6.2e-91 337.8 220 76.4
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 8.1e-91 337.4 218 77.5
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 8.1e-91 337.4 218 79.4
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.1e-90 337.0 219 79.5
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 1.4e-90 336.7 218 77.5
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.8e-90 336.3 220 75.5
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.8e-90 336.3 220 75.9
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 2.4e-90 335.9 217 77.9
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.4e-90 335.9 205 80.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 4.0e-90 335.1 205 79.0
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.2e-90 334.7 220 75.0
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 6.8e-90 334.3 217 76.5
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 8.9e-90 334.0 217 77.4
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 8.9e-90 334.0 219 76.7
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.2e-89 333.6 212 77.8
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 2.6e-89 332.4 220 77.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 3.4e-89 332.0 217 75.1
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 4.4e-89 331.6 219 75.8
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 4.4e-89 331.6 217 75.6
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 5.8e-89 331.3 219 75.3
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 7.6e-89 330.9 221 76.9
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 9.9e-89 330.5 217 76.0
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 9.9e-89 330.5 220 77.3
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 2.9e-88 328.9 219 74.4
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 2.9e-88 328.9 219 74.4
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 6.4e-88 327.8 205 76.6
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.1e-87 327.0 218 75.7
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.9e-87 326.2 220 75.5
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 4.2e-87 325.1 206 77.2
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 9.3e-87 323.9 220 75.0
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.3e-85 319.3 217 75.1
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 4.3e-84 315.1 224 75.0
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 4.8e-83 311.6 221 72.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 9.9e-81 303.9 173 85.0
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 3.9e-77 292.0 163 84.0
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.5e-76 289.3 165 83.6
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.5e-76 289.3 173 79.2
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 9.0e-74 280.8 176 77.8
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.6e-73 279.3 172 76.7
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.5e-73 278.5 169 77.5
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 8.4e-72 274.2 169 78.1
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.9e-69 265.4 165 78.8
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 3.2e-63 245.7 218 62.4
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 4.3e-60 235.3 219 57.5
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.3e-56 223.8 222 56.3
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 3.0e-53 212.6 219 55.7
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.1e-46 189.9 138 75.4
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 2.7e-46 189.5 199 52.3
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 5.1e-45 185.3 150 58.7
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 6.7e-45 184.9 166 55.4
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 3.4e-41 172.6 127 66.9
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 6.3e-27 125.2 105 64.8
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.9e-15 87.0 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.9e-15 87.0 59 71.2
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.9e-07 60.5 60 50.0
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 7.3e-07 58.5 56 55.4
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.1e-06 57.0 58 53.4


User provided reference genes

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