Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 0.0e+00 1480.7 767 100.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.5e-288 996.1 711 76.8
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.5e-111 405.6 748 39.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.9e-109 399.1 710 39.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.9e-108 396.7 762 39.4
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.8e-106 389.8 679 40.9
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.8e-103 380.2 738 39.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 8.5e-103 379.0 722 38.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.7e-98 364.8 748 37.7
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.2e-98 364.4 740 37.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-98 363.6 744 38.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.9e-95 354.0 746 38.6
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.7e-90 338.2 734 36.4
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.1e-89 334.0 673 37.1
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.1e-89 334.0 754 37.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.9e-87 327.4 712 37.5
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.2e-86 323.9 693 37.2
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 7.2e-86 322.8 730 36.8
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.2e-85 322.0 749 36.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.6e-85 321.6 730 36.7
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 4.7e-85 320.1 719 34.6
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.0e-84 318.9 730 36.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.8e-84 318.2 712 35.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.8e-82 310.8 702 35.9
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 8.3e-82 309.3 746 35.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.1e-81 307.0 713 33.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 9.1e-81 305.8 731 33.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 9.1e-81 305.8 745 35.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.7e-80 304.3 741 35.6
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.5e-80 303.9 692 33.5
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 7.7e-80 302.8 698 34.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.7e-79 301.6 731 33.5
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.8e-79 300.4 716 34.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.5e-79 299.7 733 34.8
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 6.5e-79 299.7 721 34.0
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.1e-78 298.9 710 33.8
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 9.5e-78 295.8 707 34.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.2e-77 295.4 734 35.8
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 2.8e-77 294.3 700 33.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.7e-77 293.5 725 33.1
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.8e-76 291.6 693 33.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.3e-76 291.2 725 34.1
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.0e-76 290.8 673 33.6
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.0e-76 290.4 731 34.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.2e-75 288.9 736 34.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.0e-75 288.1 677 35.3
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 3.4e-75 287.3 711 34.9
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.4e-75 287.3 737 32.0
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 4.4e-75 287.0 664 35.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.1e-73 282.3 487 40.9
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-73 282.3 705 34.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.8e-73 281.6 753 32.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.1e-73 280.8 687 35.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 9.2e-73 279.3 702 33.0
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.6e-72 278.5 690 34.6
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.6e-72 278.5 657 34.7
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.6e-72 278.5 719 34.6
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.7e-72 277.7 449 40.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.5e-72 276.9 699 33.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 7.8e-72 276.2 717 34.0
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.0e-71 275.8 516 37.8
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.7e-71 275.0 733 32.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.3e-71 274.6 716 32.4
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 5.0e-71 273.5 488 39.3
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 5.0e-71 273.5 710 33.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.6e-71 273.1 578 37.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.9e-70 271.6 711 33.8
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 5.6e-70 270.0 707 32.2
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 9.5e-70 269.2 762 31.5
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 9.5e-70 269.2 728 33.1
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.6e-69 267.3 707 33.0
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 4.7e-69 266.9 719 31.7
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.7e-69 266.9 714 32.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.0e-69 266.2 722 32.7
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-68 264.6 422 41.0
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.3e-68 264.6 690 33.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.0e-67 261.5 737 32.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.4e-67 260.8 722 33.1
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.4e-67 260.4 715 32.7
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.7e-67 260.0 704 32.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.8e-67 259.2 760 32.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.7e-66 258.5 668 32.5
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.9e-66 257.7 733 30.8
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.4e-66 256.5 780 31.3
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.4e-65 255.4 778 31.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 3.2e-65 254.2 456 39.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 7.8e-64 249.6 725 32.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-63 248.1 815 29.3
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 3.9e-63 247.3 760 30.9
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.5e-62 244.6 812 29.2
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.6e-62 243.4 522 36.4
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.6e-61 240.7 448 39.5
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 4.7e-61 240.4 698 31.1
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.5e-59 235.3 685 31.2
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.6e-59 234.6 551 33.6
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.2e-58 231.5 581 34.4
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.4e-57 228.0 662 31.1
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.4e-57 228.0 524 32.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 5.4e-57 226.9 784 30.4
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 7.0e-57 226.5 498 37.3
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 9.2e-57 226.1 504 34.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.0e-56 224.9 485 34.2
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.6e-56 223.8 466 34.3
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.0e-55 221.1 491 34.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.0e-55 221.1 676 31.1
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.0e-55 221.1 515 34.6
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.5e-54 218.0 433 34.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 4.3e-54 217.2 457 33.7
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 4.3e-54 217.2 457 33.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.5e-54 216.1 468 34.6
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.6e-53 215.3 433 34.2
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.6e-53 215.3 611 33.1
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.8e-53 214.5 681 30.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.6e-53 214.2 490 33.1
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-52 212.2 509 33.2
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.0e-52 210.7 481 33.9
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.8e-52 209.9 466 35.8
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.5e-51 208.8 453 34.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.0e-51 208.4 460 33.5
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 6.4e-50 203.4 561 29.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.9e-49 201.8 658 29.9
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.6e-48 197.2 486 33.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.7e-47 195.3 681 29.2
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.9e-47 194.1 550 30.7
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-46 192.2 679 29.0
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 5.6e-46 190.3 686 27.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.4e-43 181.0 796 26.8
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.4e-41 174.9 598 28.1
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.3e-39 168.3 370 34.6
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.9e-39 167.5 500 32.4
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.5e-38 165.6 541 29.2
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.5e-38 164.9 437 30.4
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 4.7e-37 160.6 706 24.8
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.0e-36 157.5 419 32.7
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 4.0e-36 157.5 311 40.8
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.4e-33 149.1 493 28.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-32 144.8 367 34.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 3.9e-31 141.0 457 29.5
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.5e-30 138.3 422 32.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.5e-30 138.3 552 29.2
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.6e-29 134.4 266 38.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.9e-28 130.2 278 36.3
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 6.4e-26 123.6 449 29.2
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.9e-25 122.1 112 53.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.4e-25 120.6 726 23.1
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.1e-21 108.6 200 38.5
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.1e-15 87.4 75 46.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.9e-14 85.5 83 50.6
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-13 82.4 578 21.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.1e-13 82.0 425 21.9
CDE07G1414 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 2.1e-13 82.0 92 53.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.9e-12 77.0 93 45.2
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 7.6e-11 73.6 426 23.2
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.3e-10 72.8 71 40.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 6.5e-10 70.5 49 67.3
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-08 65.5 109 31.2
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 6.0e-08 63.9 50 58.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 6.0e-08 63.9 50 58.0
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.9e-07 61.2 75 37.3
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 5.1e-07 60.8 98 36.7
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 4.3e-06 57.8 398 21.6
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 7.4e-06 57.0 62 38.7
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.7e-06 56.6 37 67.6


User provided reference genes

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