Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 0.0e+00 1791.9 929 100.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 0.0e+00 1295.8 818 85.6
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.5e-183 646.4 928 46.2
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.1e-172 610.5 998 44.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.0e-171 606.7 906 46.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.4e-162 576.6 920 44.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-159 568.2 931 44.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.2e-159 568.2 892 45.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-157 560.1 875 44.8
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.0e-154 550.8 888 43.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 9.8e-154 548.5 951 42.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.4e-153 545.8 925 42.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.2e-152 543.5 870 44.5
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.6e-151 541.2 933 42.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.9e-150 536.6 885 44.1
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.9e-149 534.3 880 44.2
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-149 533.5 899 43.6
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.2e-148 529.3 920 42.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.4e-147 528.1 945 41.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.1e-147 526.9 944 41.9
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.5e-146 524.6 883 43.3
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.6e-146 523.9 927 41.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.4e-146 523.1 901 41.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.3e-145 521.5 933 42.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.2e-145 520.8 854 44.6
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.9e-145 520.4 945 41.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.9e-145 520.4 924 42.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.7e-145 520.0 917 41.2
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 8.3e-145 518.8 914 42.3
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-144 518.5 930 41.9
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-144 517.7 945 41.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.9e-144 517.7 926 40.4
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.6e-143 514.6 878 43.3
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 6.0e-143 512.7 967 41.5
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 3.9e-142 510.0 886 43.1
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.9e-142 510.0 911 41.2
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.0e-142 509.6 930 42.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.0e-142 509.6 916 40.9
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-141 508.1 920 39.5
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-141 506.5 918 39.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.6e-141 506.1 916 40.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 4.7e-140 503.1 924 41.1
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.2e-140 502.7 916 40.5
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-139 501.9 914 39.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.4e-139 501.5 828 42.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.3e-139 500.7 903 40.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.3e-139 500.7 925 41.5
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 4.0e-139 500.0 929 41.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.6e-138 497.3 913 41.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.8e-138 496.1 861 41.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.2e-137 494.2 899 42.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.9e-137 493.0 851 40.8
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 6.4e-137 492.7 829 41.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 8.3e-137 492.3 919 40.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.9e-136 491.1 922 39.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.2e-136 490.3 928 39.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.7e-135 487.3 880 40.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 4.6e-135 486.5 861 41.5
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 6.0e-135 486.1 921 40.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.1e-134 483.0 829 41.4
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.9e-133 481.1 868 40.7
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.1e-132 477.6 877 39.5
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 2.1e-132 477.6 921 39.2
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.6e-132 476.9 857 40.6
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 4.7e-132 476.5 937 39.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 6.2e-132 476.1 831 40.6
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.1e-132 475.7 870 40.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.1e-131 473.8 904 40.0
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.2e-130 471.9 853 41.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.0e-130 471.1 950 39.3
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.2e-129 467.6 854 39.3
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.9e-129 466.5 778 44.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.9e-129 466.5 924 39.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 6.4e-129 466.1 882 41.5
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 8.4e-129 465.7 907 40.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.1e-128 465.3 860 39.3
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 3.2e-128 463.8 929 40.0
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.1e-127 461.1 804 40.4
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 3.5e-127 460.3 912 37.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 6.0e-127 459.5 891 40.9
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.0e-126 458.8 895 40.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.0e-126 457.2 912 38.5
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 6.6e-126 456.1 670 46.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.3e-125 453.4 857 39.1
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-124 451.4 723 43.2
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.1e-124 451.1 882 39.1
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.6e-124 450.3 851 38.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.4e-123 448.4 882 40.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.4e-123 448.4 925 40.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-123 447.2 854 39.0
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.8e-122 443.0 929 38.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.3e-121 441.8 795 40.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.7e-121 441.4 904 37.5
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.8e-121 440.3 945 37.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.9e-121 439.9 831 38.9
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 8.4e-121 439.1 914 37.7
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.2e-120 437.2 905 38.9
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-119 434.1 860 38.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.7e-118 431.4 924 37.8
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 5.1e-118 429.9 949 38.1
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 6.6e-118 429.5 985 36.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.5e-117 428.3 870 39.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.3e-117 426.8 855 38.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.3e-117 426.8 911 39.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.3e-117 426.8 918 38.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 7.3e-117 426.0 674 43.6
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 7.3e-117 426.0 887 38.0
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.1e-116 424.5 948 36.5
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.8e-116 423.3 694 42.1
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 4.0e-115 420.2 827 38.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.6e-114 417.5 788 39.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.6e-114 417.5 962 35.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-112 412.1 883 40.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 9.3e-112 409.1 827 38.2
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.1e-111 407.9 819 38.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.1e-111 407.9 820 38.7
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.7e-111 407.5 866 38.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 3.5e-111 407.1 801 38.3
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.9e-110 403.7 841 39.7
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-109 401.0 650 42.0
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.7e-108 397.1 888 36.5
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-107 394.0 913 36.4
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-106 392.1 802 38.5
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.0e-106 391.3 932 36.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.0e-106 391.3 899 36.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.6e-106 391.0 917 37.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.6e-106 391.0 802 38.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 4.5e-106 390.2 798 37.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 4.5e-106 390.2 798 37.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.8e-106 389.8 926 36.9
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 7.6e-106 389.4 829 37.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.6e-106 389.4 669 42.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 3.3e-101 374.0 592 46.3
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-98 364.4 760 37.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.3e-97 362.1 780 35.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.1e-96 359.0 797 36.6
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.2e-90 339.0 681 37.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.6e-90 337.8 842 36.8
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 6.1e-87 326.6 573 38.9
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.1e-83 314.3 441 45.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.6e-82 311.2 816 32.5
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 2.9e-81 307.8 1025 32.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.1e-78 297.0 617 37.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-77 295.4 787 31.9
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.6e-77 294.7 890 30.9
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.3e-76 290.0 700 38.3
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.3e-76 290.0 795 32.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 9.4e-72 276.2 474 40.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.1e-71 275.0 498 40.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.9e-70 270.8 854 31.9
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 3.6e-63 247.7 693 33.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 6.5e-57 226.9 359 39.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.0e-54 219.5 282 48.6
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-54 219.2 337 42.7
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-53 215.7 418 40.2
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.9e-49 201.4 913 28.8
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.8e-46 192.2 530 32.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.7e-44 184.5 441 31.1
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.1e-43 181.0 380 38.2
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.8e-38 165.6 206 47.1
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.6e-34 151.0 223 45.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.3e-33 148.7 318 38.1
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 7.3e-32 143.7 129 53.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.3e-28 130.2 189 45.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 3.2e-27 128.3 290 39.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.9e-24 119.0 291 37.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-22 113.2 254 34.6
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 8.9e-22 110.2 117 50.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.4e-20 104.0 246 35.8
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 6.4e-20 104.0 166 38.6
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 6.0e-18 97.4 158 40.5
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.2e-15 89.7 92 44.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.9e-12 77.8 100 49.0
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 6.4e-12 77.4 91 47.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 7.8e-10 70.5 51 56.9
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.6e-07 62.8 75 42.7
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.6e-07 62.8 137 32.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 6.2e-07 60.8 103 36.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.4e-06 58.9 92 39.1


User provided reference genes

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