Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.3e-96 356.3 170 100.0
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 8.9e-37 157.5 364 31.6
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.8e-36 154.8 364 31.0
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 5.1e-32 141.7 252 34.5
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 5.8e-28 128.3 340 28.2
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-27 127.1 334 29.0
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.8e-27 125.6 334 28.7
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 4.9e-27 125.2 341 28.2
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 4.9e-27 125.2 334 28.7
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 6.4e-27 124.8 351 28.2
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 8.4e-27 124.4 72 75.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.9e-26 123.2 339 28.0
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.9e-26 123.2 336 28.6
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.4e-26 122.9 339 27.1
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 2.4e-26 122.9 339 28.3
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 3.2e-26 122.5 79 70.9
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.1e-26 122.1 311 29.6
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 5.4e-26 121.7 340 27.6
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 5.4e-26 121.7 340 28.2
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 5.4e-26 121.7 332 28.0
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 7.1e-26 121.3 338 29.0
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 9.2e-26 120.9 339 28.0
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.6e-25 120.2 339 27.4
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-25 119.8 339 27.4
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.1e-25 119.8 343 28.3
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 2.7e-25 119.4 333 28.8
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 3.5e-25 119.0 344 27.6
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 3.5e-25 119.0 339 27.7
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 4.6e-25 118.6 321 28.3
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.6e-25 118.6 338 28.7
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 6.0e-25 118.2 351 27.4
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.0e-25 118.2 340 28.2
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 6.0e-25 118.2 360 26.9
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 7.8e-25 117.9 338 28.1
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 7.8e-25 117.9 338 28.4
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.0e-24 117.5 335 27.8
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.3e-24 117.1 339 27.1
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.7e-24 116.7 339 27.1
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.7e-24 116.7 338 26.9
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.7e-24 116.7 341 27.9
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.7e-24 116.7 341 28.2
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.3e-24 116.3 339 27.4
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.3e-24 116.3 70 72.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.3e-24 116.3 341 27.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 2.3e-24 116.3 339 27.1
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.0e-24 115.9 335 27.5
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.0e-24 115.9 348 27.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 3.0e-24 115.9 340 27.4
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 3.9e-24 115.5 339 27.4
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 3.9e-24 115.5 340 27.6
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 3.9e-24 115.5 339 27.4
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 3.9e-24 115.5 335 27.2
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 5.1e-24 115.2 338 28.1
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 5.1e-24 115.2 340 27.4
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.6e-24 114.4 336 27.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 8.6e-24 114.4 340 27.6
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.1e-23 114.0 340 26.5
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.5e-23 113.6 340 26.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.9e-23 113.2 340 26.8
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.9e-23 113.2 335 27.2
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 2.5e-23 112.8 340 27.4
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.5e-23 112.8 340 27.6
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.3e-23 112.5 75 68.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 5.6e-23 111.7 340 26.8
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 5.6e-23 111.7 338 27.2
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 7.3e-23 111.3 334 26.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 7.3e-23 111.3 339 26.8
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 7.3e-23 111.3 79 65.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 9.6e-23 110.9 85 58.8
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.2e-22 110.5 69 71.0
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.2e-22 110.5 340 27.1
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.6e-22 110.2 341 26.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.6e-22 110.2 339 27.1
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.6e-22 110.2 340 27.1
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 2.1e-22 109.8 340 27.1
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 2.1e-22 109.8 143 44.8
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 2.8e-22 109.4 344 26.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.8e-22 109.4 340 26.2
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 2.8e-22 109.4 340 26.2
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 2.8e-22 109.4 338 25.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.8e-22 109.4 81 61.7
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.6e-22 109.0 82 63.4
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.6e-22 109.0 79 63.3
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 3.6e-22 109.0 320 27.5
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 4.7e-22 108.6 74 67.6
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.7e-22 108.6 339 26.5
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 6.2e-22 108.2 80 63.8
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 6.2e-22 108.2 70 70.0
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.1e-21 107.5 80 63.8
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.1e-21 107.5 82 62.2
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.4e-21 107.1 330 26.1
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.4e-21 107.1 75 66.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 1.4e-21 107.1 338 27.8
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.4e-21 106.3 74 63.5
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-21 106.3 84 60.7
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-21 106.3 343 25.4
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 2.4e-21 106.3 81 60.5
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 3.1e-21 105.9 82 58.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 4.0e-21 105.5 82 58.5
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 5.2e-21 105.1 79 62.0
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 5.2e-21 105.1 85 58.8
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 5.2e-21 105.1 74 66.2
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 5.2e-21 105.1 73 65.8
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 5.2e-21 105.1 146 41.1
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 8.9e-21 104.4 81 61.7
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 8.9e-21 104.4 337 24.9
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-20 104.0 74 62.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.5e-20 103.6 75 61.3
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.5e-20 103.6 83 60.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.5e-20 103.6 83 60.2
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.5e-20 103.6 75 61.3
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.5e-20 103.6 69 65.2
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.0e-20 103.2 79 60.8
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 2.0e-20 103.2 87 57.5
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 5.8e-20 101.7 75 61.3
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.3e-19 100.5 76 59.2
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.9e-19 98.6 371 25.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-18 97.4 59 71.2
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.9e-18 96.7 137 42.3
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 4.2e-18 95.5 139 41.0
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 5.4e-18 95.1 134 42.5
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 7.1e-18 94.7 63 68.3
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 4.6e-17 92.0 63 66.7
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 7.8e-17 91.3 84 59.5
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.0e-16 90.9 122 42.6
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.5e-15 87.0 63 61.9
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.6e-15 85.1 140 37.1
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 3.1e-13 79.3 64 57.8
CDE07G1693 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 6.9e-13 78.2 44 81.8
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 3.4e-12 75.9 63 58.7
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 3.4e-12 75.9 63 58.7
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 1.4e-10 70.5 75 45.3
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.4e-10 69.7 71 49.3
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.2e-10 68.9 70 51.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.5e-09 65.9 61 50.8
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.8e-08 63.5 43 65.1
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.8e-08 63.5 43 65.1
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-07 60.8 43 62.8
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-07 60.8 43 62.8
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 8.1e-06 54.7 43 60.5


User provided reference genes

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