Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 8.1e-154 547.0 263 100.0
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.5e-144 516.2 263 94.3
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 6.9e-129 464.2 263 84.0
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.9e-126 456.1 257 84.4
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 7.1e-126 454.1 257 84.8
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.6e-125 453.0 257 83.3
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 2.1e-125 452.6 263 82.5
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 2.7e-125 452.2 257 83.7
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.8e-124 449.5 257 82.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 1.8e-124 449.5 258 82.9
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 2.3e-124 449.1 258 82.9
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.3e-124 449.1 257 82.9
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 3.0e-124 448.7 257 82.9
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.0e-124 448.7 257 83.3
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 5.1e-124 448.0 257 83.7
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 5.1e-124 448.0 257 81.7
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 6.7e-124 447.6 263 81.4
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.1e-123 446.8 257 82.5
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 3.3e-123 445.3 257 81.7
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 3.3e-123 445.3 257 83.3
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 4.3e-123 444.9 257 82.1
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 4.3e-123 444.9 257 83.3
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 5.6e-123 444.5 257 81.3
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 5.6e-123 444.5 257 82.1
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 5.6e-123 444.5 257 82.1
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 7.4e-123 444.1 257 82.1
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 7.4e-123 444.1 263 79.8
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.3e-122 443.4 257 82.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.3e-122 443.4 257 81.7
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 82.1
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 82.1
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 82.1
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 81.3
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 81.7
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 82.1
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.1e-122 442.6 257 81.7
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.1e-122 442.6 257 81.3
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.8e-122 442.2 257 83.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.8e-122 442.2 257 82.1
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 3.7e-122 441.8 257 81.3
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 4.8e-122 441.4 257 80.9
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 8.1e-122 440.7 257 81.3
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.1e-121 440.3 257 80.5
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 1.1e-121 440.3 257 80.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-121 440.3 257 81.3
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.4e-121 439.9 257 81.3
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.8e-121 439.5 257 80.9
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.8e-121 439.5 257 80.9
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.4e-121 439.1 256 82.8
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.4e-121 439.1 257 80.5
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.1e-121 438.7 257 80.9
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.1e-121 438.7 257 80.9
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 3.1e-121 438.7 257 80.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.1e-121 438.7 257 81.3
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.1e-121 438.7 257 80.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 3.1e-121 438.7 257 81.7
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 4.0e-121 438.3 257 80.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 5.3e-121 438.0 257 81.3
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 5.3e-121 438.0 257 81.7
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.9e-121 437.6 257 81.3
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 9.0e-121 437.2 257 82.1
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.2e-120 436.8 257 81.3
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 1.5e-120 436.4 259 80.3
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 2.0e-120 436.0 257 80.9
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 3.4e-120 435.3 257 80.2
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.4e-120 435.3 257 79.8
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 3.4e-120 435.3 257 81.3
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.5e-120 434.9 257 79.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 4.5e-120 434.9 256 81.6
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 7.6e-120 434.1 262 80.5
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.7e-119 433.0 257 80.9
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.7e-119 433.0 255 81.6
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.9e-119 432.2 257 80.2
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.9e-119 432.2 257 80.2
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 2.9e-119 432.2 257 80.2
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.8e-119 431.8 263 79.1
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 4.9e-119 431.4 257 80.5
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 6.5e-119 431.0 257 81.3
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-118 430.3 257 80.2
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.1e-118 430.3 257 79.8
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.1e-118 430.3 275 75.3
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.9e-118 429.5 257 79.8
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.9e-118 429.5 257 79.8
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.9e-118 429.5 257 79.4
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.9e-118 429.5 255 80.4
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.5e-118 429.1 257 79.4
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.5e-118 429.1 257 79.4
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 2.5e-118 429.1 257 79.0
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 3.2e-118 428.7 257 79.4
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 3.2e-118 428.7 257 79.8
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.2e-118 428.7 264 79.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 3.2e-118 428.7 257 79.4
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 4.2e-118 428.3 257 79.8
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 9.3e-118 427.2 256 80.5
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.1e-117 426.0 257 79.0
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 2.7e-117 425.6 257 79.4
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 6.0e-117 424.5 257 78.6
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 7.9e-117 424.1 257 79.0
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 7.9e-117 424.1 257 78.6
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.8e-116 422.9 257 78.6
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.9e-116 421.8 257 79.0
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.9e-116 421.8 257 79.0
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 3.9e-116 421.8 257 79.0
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 5.1e-116 421.4 257 79.0
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 8.7e-116 420.6 257 78.6
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 2.5e-115 419.1 257 77.8
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 2.5e-115 419.1 308 68.8
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 9.6e-115 417.2 231 83.1
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 6.3e-114 414.5 257 77.4
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 2.4e-113 412.5 280 72.1
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.4e-112 408.7 242 80.6
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.1e-110 403.7 242 80.6
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.4e-110 403.3 265 76.6
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 2.1e-109 399.4 253 74.7
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.1e-107 393.7 229 79.5
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.5e-107 393.3 296 68.2
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.3e-106 390.2 266 72.6
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.5e-104 383.3 222 82.0
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.5e-104 383.3 231 75.8
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.4e-102 376.7 257 72.8
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.4e-102 376.7 234 74.4
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 2.5e-102 375.9 269 68.8
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 5.5e-102 374.8 200 86.5
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.5e-102 374.8 263 71.5
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.6e-101 373.2 231 75.8
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.6e-101 373.2 231 75.8
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 7.4e-99 364.4 233 73.0
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 9.1e-97 357.5 233 71.7
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 3.8e-95 352.1 321 58.6
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.1e-93 346.3 257 67.7
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.8e-90 335.9 242 70.2
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 3.1e-81 305.8 161 89.4
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 9.1e-81 304.3 246 60.6
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.2e-80 303.9 160 87.5
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 4.5e-80 302.0 253 61.7
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 5.9e-80 301.6 162 87.0
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 2.3e-76 289.7 226 67.3
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 9.8e-75 284.3 173 79.2
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 4.8e-74 282.0 201 69.2
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.8e-74 282.0 175 77.7
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.7e-71 273.5 234 53.0
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 2.3e-71 273.1 162 81.5
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.0e-60 237.7 270 50.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.0e-56 223.4 117 90.6
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 7.8e-56 221.5 135 77.0
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.5e-54 217.2 116 88.8
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.7e-50 203.8 216 45.8
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 3.0e-47 193.0 101 91.1
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 2.8e-45 186.4 121 75.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 2.3e-44 183.3 109 81.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.4e-43 179.1 165 58.2
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 3.7e-42 176.0 235 43.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.3e-38 162.5 89 83.1
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 9.5e-38 161.4 83 86.7
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 4.7e-37 159.1 84 84.5
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.1e-36 157.9 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.9e-36 154.8 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.0e-35 153.7 89 78.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.9e-34 149.8 89 77.5
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.8e-34 149.4 75 90.7
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.4e-33 147.5 102 70.6
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 3.2e-33 146.4 93 74.2
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.1e-32 143.7 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.5e-32 142.9 81 81.5
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-31 138.3 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-31 138.3 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-31 138.3 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-31 138.3 75 82.7
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.3e-30 136.3 75 81.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 7.3e-30 135.2 81 76.5
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.1e-28 131.3 75 78.7
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 5.2e-28 129.0 84 75.0
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-27 127.5 71 84.5
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.6e-27 126.7 76 77.6
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 4.2e-25 119.4 82 73.2
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 4.5e-11 72.8 41 80.5
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 5.1e-07 59.3 31 80.6
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 2.5e-06 57.0 47 63.8


User provided reference genes

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