Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1708 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 1.4e-66 256.1 132 100.0
CDE08G0547 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 2.1e-57 225.7 131 89.3
Potri.005G056500 Populus trichocarpa HOM05D007422 ORTHO05D009333 2.3e-40 169.1 130 66.9
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 6.7e-40 167.5 128 69.5
Dinv18494 Davidia involucrata HOM05D007422 ORTHO05D009333 1.1e-39 166.8 129 69.8
Aqoxy5G02143 Aquilegia oxysepala HOM05D007422 ORTHO05D009333 4.3e-39 164.9 109 71.6
Nn1g06132 Nelumbo nucifera HOM05D007422 ORTHO05D009333 9.7e-39 163.7 126 69.0
Prupe.6G165000 Prunus persica HOM05D007422 ORTHO05D009333 9.7e-39 163.7 127 68.5
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 1.6e-38 162.9 119 66.4
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 1.6e-38 162.9 117 66.7
vmacro18659 Vaccinium macrocarpon HOM05D007422 ORTHO05D009333 2.2e-38 162.5 132 62.1
RcHm_v2.0_Chr2g0118261 Rosa chinensis HOM05D007422 ORTHO05D009333 2.8e-38 162.2 128 65.6
MSTRG.2680 Avicennia marina HOM05D007422 ORTHO05D009333 6.3e-38 161.0 122 68.0
CANSAT01G0526 Cannabis sativa HOM05D007422 ORTHO05D009333 8.2e-38 160.6 123 66.7
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 8.2e-38 160.6 121 64.5
Manes.12G151400 Manihot esculenta HOM05D007422 ORTHO05D009333 1.1e-37 160.2 129 63.6
Manes.12G151600 Manihot esculenta HOM05D007422 ORTHO05D009333 1.1e-37 160.2 129 63.6
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 1.8e-37 159.5 121 63.6
PSO170G3514 Papaver somniferum HOM05D007422 ORTHO05D009333 2.4e-37 159.1 120 65.0
Cc07_g17580 Coffea canephora HOM05D007422 ORTHO05D009333 3.1e-37 158.7 126 67.5
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 5.3e-37 157.9 126 61.9
Duzib264G1170 Durio zibethinus HOM05D007422 ORTHO05D009333 9.0e-37 157.1 126 63.5
MBI17_g11164_MAGBIO Magnolia biondii HOM05D007422 ORTHO05D009333 9.0e-37 157.1 106 68.9
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 9.0e-37 157.1 114 65.8
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 1.2e-36 156.8 126 62.7
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 1.2e-36 156.8 126 62.7
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 2.6e-36 155.6 127 63.0
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 3.4e-36 155.2 118 66.1
DCAR_031485 Daucus carota HOM05D007422 ORTHO05D009333 3.4e-36 155.2 126 63.5
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 3.4e-36 155.2 128 62.5
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 4.5e-36 154.8 126 62.7
Oeu039761.1 Olea europaea HOM05D007422 ORTHO05D009333 4.5e-36 154.8 125 64.8
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 7.6e-36 154.1 113 66.4
TWI31G1366 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 7.6e-36 154.1 126 59.5
PSO017G6029 Papaver somniferum HOM05D007422 ORTHO05D009333 1.0e-35 153.7 110 65.5
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 1.3e-35 153.3 120 62.5
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 1.3e-35 153.3 114 65.8
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 1.3e-35 153.3 117 64.1
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 1.3e-35 153.3 119 65.5
Sabra05G0048800 Salix brachista HOM05D007422 ORTHO05D009333 1.7e-35 152.9 139 60.4
ATR0772G041 Amborella trichopoda HOM05D007422 ORTHO05D009333 2.2e-35 152.5 130 60.0
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 2.9e-35 152.1 129 62.8
Thecc.01G123800 Theobroma cacao HOM05D007422 ORTHO05D009333 2.9e-35 152.1 126 62.7
COL.COLO4_21895 Corchorus olitorius HOM05D007422 ORTHO05D009333 6.5e-35 151.0 117 62.4
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 6.5e-35 151.0 117 62.4
arahy.Tifrunner.gnm1.ann1.DL1AJH Arachis hypogaea HOM05D007422 ORTHO05D009333 8.5e-35 150.6 124 62.9
Migut.H01100 Erythranthe guttata HOM05D007422 ORTHO05D009333 8.5e-35 150.6 119 62.2
Lj1g0018544 Lotus japonicus HOM05D007422 ORTHO05D009333 8.5e-35 150.6 124 61.3
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 8.5e-35 150.6 120 61.7
Lalb_Chr08g0238531 Lupinus albus HOM05D007422 ORTHO05D009333 1.9e-34 149.4 124 62.1
Nitab4.5_0006443g0040 Nicotiana tabacum HOM05D007422 ORTHO05D009333 2.5e-34 149.1 121 62.8
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 2.5e-34 149.1 123 61.0
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 4.2e-34 148.3 127 62.2
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 4.2e-34 148.3 127 62.2
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 5.5e-34 147.9 121 58.7
arahy.Tifrunner.gnm1.ann1.PIK6SY Arachis hypogaea HOM05D007422 ORTHO05D009333 9.3e-34 147.1 124 61.3
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 1.2e-33 146.7 124 59.7
Peaxi162Scf00583g00227 Petunia axillaris HOM05D007422 ORTHO05D009333 1.6e-33 146.4 123 61.8
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 2.1e-33 146.0 125 59.2
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 2.1e-33 146.0 127 60.6
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 2.1e-33 146.0 127 59.8
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 2.7e-33 145.6 124 60.5
Os04g0686300 Oryza sativa ssp. japonica HOM05D007422 ORTHO05D009333 2.7e-33 145.6 126 56.3
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 2.7e-33 145.6 115 60.9
Zm00001eb076010 Zea mays HOM05D007422 ORTHO05D009333 2.7e-33 145.6 101 63.4
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 3.6e-33 145.2 125 57.6
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 4.6e-33 144.8 125 59.2
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 4.6e-33 144.8 117 59.8
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 7.9e-33 144.1 127 59.8
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 7.9e-33 144.1 127 59.8
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 1.0e-32 143.7 127 58.3
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 1.3e-32 143.3 128 57.8
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 1.3e-32 143.3 105 73.3
Sc03g0005110 Simmondsia chinensis HOM05D007422 ORTHO05D009333 1.3e-32 143.3 144 54.2
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 1.8e-32 142.9 127 56.7
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 2.3e-32 142.5 124 59.7
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 3.9e-32 141.7 127 58.3
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 6.7e-32 141.0 129 57.4
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 8.7e-32 140.6 130 56.9
unitig_60.g25621 Utricularia gibba HOM05D007422 ORTHO05D009333 2.5e-31 139.0 114 60.5
HPP92_006817 Vanilla planifolia HOM05D007422 ORTHO05D009333 4.3e-31 138.3 117 57.3
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 9.7e-31 137.1 128 55.5
Prupe.6G164500 Prunus persica HOM05D007422 ORTHO05D009333 1.4e-29 133.3 121 57.9
Ca_16922_v3 Cicer arietinum L. HOM05D007422 ORTHO05D009333 1.2e-28 130.2 124 55.6
FvH4_1g23360 Fragaria vesca HOM05D007422 ORTHO05D009333 1.7e-27 126.3 127 53.5
FAN19G2306 Fragaria x ananassa HOM05D007422 ORTHO05D009333 5.5e-26 121.3 123 53.7
GSVIVG01026559001 Vitis vinifera HOM05D007422 ORTHO05D009333 2.3e-24 115.9 77 75.3
CsaV3_2G018110 Cucumis sativus L. HOM05D007422 ORTHO05D009333 6.7e-24 114.4 76 71.1
BcaB02g11281 Brassica carinata HOM05D007422 ORTHO05D009333 7.4e-23 110.9 127 48.8
EL10Ac6g15266 Beta vulgaris HOM05D007422 ORTHO05D009333 2.8e-22 109.0 76 67.1
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 1.1e-21 107.1 96 51.0
Eucgr.H04923 Eucalyptus grandis HOM05D007422 ORTHO05D009333 2.6e-20 102.4 68 72.1
ClCG02G000660 Citrullus lanatus HOM05D007422 ORTHO05D009333 7.7e-20 100.9 81 64.2
Dinv05702 Davidia involucrata HOM05D007422 ORTHO05D009333 3.8e-19 98.6 69 71.0
Haze_25151 Corylus avellana HOM05D007422 ORTHO05D009333 5.0e-19 98.2 80 62.5
AUR62003614 Chenopodium quinoa HOM05D007422 ORTHO05D009333 1.9e-18 96.3 126 46.0
CSS0008685 Camellia sinensis var. sinensis HOM05D007422 ORTHO05D009333 3.2e-18 95.5 77 61.0
AUR62017925 Chenopodium quinoa HOM05D007422 ORTHO05D009333 8.0e-17 90.9 84 59.5
Sed0005171 Sechium edule HOM05D007422 ORTHO05D009333 5.2e-16 88.2 95 53.7
BcaB02g11285 Brassica carinata HOM05D007422 ORTHO05D009333 1.8e-13 79.7 116 44.8
Sabra05G0049000 Salix brachista HOM05D007422 ORTHO05D009333 2.3e-08 62.8 50 64.0
Pp3c13_2330 Physcomitrium patens HOM05D007422 ORTHO05D009333 3.0e-08 62.4 67 49.3
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 3.3e-07 58.9 71 46.5
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 9.7e-07 57.4 105 28.6
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 1.7e-06 56.6 105 29.5
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 1.7e-06 56.6 105 29.5
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 2.2e-06 56.2 105 28.6
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 2.2e-06 56.2 108 27.8
Pp3c18_15000 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.2e-06 56.2 108 28.7
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 29.5
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 2.8e-06 55.8 105 29.5
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 2.8e-06 55.8 105 29.5
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 2.8e-06 55.8 105 29.5
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 2.8e-06 55.8 105 29.5
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 28.6
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 29.5
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 2.8e-06 55.8 109 29.4
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 28.6
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 29.5
FAN23G3068 Fragaria x ananassa HOM05D007422 ORTHO05D009333 2.8e-06 55.8 55 56.4
RcHm_v2.0_Chr2g0118341 Rosa chinensis HOM05D007422 ORTHO05D009333 2.8e-06 55.8 42 57.1
SEGI_01164 Sequoiadendron giganteum HOM05D006654 ORTHO05D008201 2.8e-06 55.8 108 27.8
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 28.6
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 28.6
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 2.8e-06 55.8 105 28.6
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 28.6
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 28.6
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 28.6
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 28.6
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 28.6
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 27.6
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 27.6
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 3.7e-06 55.5 105 28.6
FvH4_7g00630 Fragaria vesca HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 28.6
FAN01G0962 Fragaria x ananassa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 28.6
FAN03G1885 Fragaria x ananassa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 28.6
FAN06G4528 Fragaria x ananassa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 28.6
FAN10G2487 Fragaria x ananassa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 28.6
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 27.6
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 4.8e-06 55.1 108 27.8
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 4.8e-06 55.1 108 27.8
Potri.015G094300 Populus trichocarpa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 29.5
RcHm_v2.0_Chr1g0314831 Rosa chinensis HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 28.6
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 27.6
TWI23G1026 Tripterygium wilfordii HOM05D006654 ORTHO05D008201 4.8e-06 55.1 105 29.5
TAR371G0211 Trochodendron aralioides HOM05D006654 ORTHO05D008201 4.8e-06 55.1 108 27.8
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 6.3e-06 54.7 108 26.9
Duzib068G1280 Durio zibethinus HOM05D006654 ORTHO05D008201 6.3e-06 54.7 105 28.6
FAN01G2458 Fragaria x ananassa HOM05D006654 ORTHO05D008201 6.3e-06 54.7 105 28.6
MD02G1316100 Malus domestica HOM05D006654 ORTHO05D008201 6.3e-06 54.7 105 27.6
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 6.3e-06 54.7 105 27.6
Prupe.1G190000 Prunus persica HOM05D006654 ORTHO05D008201 6.3e-06 54.7 105 27.6
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
CiPaw.12G042200 Carya illinoinensis HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
ClCG03G003720 Citrullus lanatus HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Haze_07229 Corylus avellana HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
CsaV3_1G009610 Cucumis sativus L. HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Gohir.D03G115000 Gossypium hirsutum HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Gorai.003G121200 Gossypium raimondii HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Hma1.2p1_0014F.1_g009560 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 8.2e-06 54.3 109 27.5
MBI07_g34629_MAGBIO Magnolia biondii HOM05D006654 ORTHO05D008201 8.2e-06 54.3 108 26.9
Manes.06G118600 Manihot esculenta HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Manes.14G052100 Manihot esculenta HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Os07g0295200 Oryza sativa ssp. japonica HOM05D006654 ORTHO05D008201 8.2e-06 54.3 108 26.9
Prupe.4G287600 Prunus persica HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
Sed0016483 Sechium edule HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
SMO364G0616 Selaginella moellendorffii HOM05D006654 ORTHO05D008201 8.2e-06 54.3 108 26.9
Thecc.03G127500 Theobroma cacao HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6
GSVIVG01008527001 Vitis vinifera HOM05D006654 ORTHO05D008201 8.2e-06 54.3 105 27.6


User provided reference genes

Program Settings