Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 2392.1 1234 100.0
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1224.9 1353 52.0
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1224.9 1359 52.0
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1219.1 1358 51.5
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1170.2 1370 50.4
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1161.7 1360 49.6
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1153.7 1355 50.3
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1153.3 1359 49.4
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1152.5 1330 50.0
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1152.5 1355 49.4
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1152.1 1355 50.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1144.8 1327 49.1
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1143.3 1354 49.9
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1135.6 1369 49.6
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1122.8 1363 48.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1099.3 1329 48.7
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1092.8 1332 48.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1083.9 1367 46.9
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1083.2 1341 47.7
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1079.3 1353 47.3
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.9e-309 1066.2 1328 48.1
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 5.4e-309 1064.7 1350 47.2
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 7.1e-309 1064.3 1364 46.6
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 8.6e-307 1057.4 1367 46.5
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 1.1e-306 1057.0 1334 47.2
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 4.7e-305 1051.6 1473 45.3
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 1.5e-303 1046.6 1395 45.9
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 3.4e-303 1045.4 1340 47.6
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 9.9e-303 1043.9 1334 46.4
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 6.4e-302 1041.2 1363 45.6
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 2.1e-300 1036.2 1452 43.9
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 1.5e-298 1030.0 1331 45.8
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 2.8e-297 1025.8 1495 43.7
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 2.0e-295 1019.6 1318 45.3
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.2e-294 1016.1 1360 45.4
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 4.9e-294 1015.0 1362 46.0
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 2.4e-293 1012.7 1333 45.9
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 4.2e-293 1011.9 1364 45.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 2.1e-292 1009.6 1359 45.4
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.1e-292 1009.6 1349 45.4
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 6.0e-292 1008.1 1331 46.2
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 3.9e-291 1005.4 1372 45.5
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 5.6e-290 1001.5 1347 44.5
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 7.3e-290 1001.1 1412 45.3
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 9.6e-290 1000.7 1332 45.6
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 1.3e-289 1000.3 1342 46.1
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 2.8e-289 999.2 1337 45.2
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 3.6e-289 998.8 1355 45.8
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 3.6e-289 998.8 1333 45.0
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 9.0e-288 994.2 1340 45.1
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 1.5e-287 993.4 1344 45.2
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 2.6e-287 992.6 1343 45.3
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 2.9e-286 989.2 1328 45.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 3.8e-286 988.8 1335 45.2
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 4.9e-286 988.4 1348 45.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 6.4e-286 988.0 1345 44.2
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 8.4e-286 987.6 1343 44.8
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 9.3e-285 984.2 1428 43.0
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 2.7e-284 982.6 1347 44.8
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 2.7e-284 982.6 1347 44.8
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 2.7e-284 982.6 1347 44.8
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 6.0e-284 981.5 1337 44.4
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 3.9e-283 978.8 1344 44.4
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 3.3e-282 975.7 1342 44.4
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 1.8e-280 969.9 1338 44.7
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 3.1e-280 969.1 1416 43.9
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 6.9e-280 968.0 1337 44.7
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 7.6e-279 964.5 1343 44.4
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 6.0e-276 954.9 1369 43.5
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 3.0e-275 952.6 1288 44.7
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 1.1e-274 950.7 1447 42.4
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 1.5e-274 950.3 1394 43.1
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 1.3e-273 947.2 1407 42.7
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 4.8e-273 945.3 1329 45.1
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 6.9e-272 941.4 1326 43.5
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.6e-271 939.5 1347 42.8
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 7.6e-271 937.9 1346 42.9
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 1.3e-270 937.2 1348 42.5
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 7.1e-269 931.4 1342 42.9
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.5e-268 929.1 1312 43.1
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.3e-267 927.2 1386 41.8
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 2.5e-266 922.9 1331 42.9
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 6.3e-265 918.3 1275 46.0
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.8e-264 916.8 1383 41.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.3e-262 910.6 1109 49.4
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.2e-262 909.8 1387 41.5
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 2.5e-261 906.4 1338 42.7
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 1.1e-258 897.5 1373 42.4
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 1.1e-256 891.0 1323 42.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.5e-255 887.1 1217 45.9
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 1.7e-249 867.1 1047 48.8
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-247 860.5 1384 41.2
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 6.3e-233 812.0 1253 41.9
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 8.0e-220 768.5 918 49.7
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 7.8e-215 751.9 1341 37.1
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.2e-212 744.6 851 49.8
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 7.3e-205 718.8 672 58.9
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.1e-189 668.3 776 49.7
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.9e-189 667.5 358 93.9
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 4.3e-189 666.4 642 58.6
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.6e-172 610.1 480 63.3
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 6.7e-166 589.3 509 59.9
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.7e-158 562.4 756 43.4
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.4e-147 528.5 360 71.7
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 3.4e-138 497.3 1300 31.1
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 8.5e-137 492.7 709 44.7
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 3.3e-133 480.7 914 37.5
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 4.2e-128 463.8 387 59.9
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.8e-123 448.4 1330 28.4
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.1e-120 439.1 417 51.3
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 2.5e-120 438.0 1083 31.4
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.5e-112 412.1 918 35.7
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 7.2e-112 409.8 617 42.0
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.7e-111 407.1 825 36.0
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 4.5e-106 390.6 602 40.0
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.0e-105 389.4 1331 26.3
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 4.4e-101 374.0 610 37.5
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 8.9e-94 349.7 434 43.1
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.0e-85 322.0 326 48.5
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 2.1e-74 285.4 505 38.2
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 5.8e-69 267.3 352 45.5
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.3e-57 229.6 316 45.6
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.5e-56 225.3 675 29.0
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.6e-53 213.8 232 52.6
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 9.6e-48 196.8 279 41.2
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-43 182.2 121 73.6
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.8e-38 166.0 244 43.0
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 2.3e-33 149.1 265 37.0
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.1e-32 146.7 330 36.1
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 3.8e-28 131.7 362 27.9
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 8.5e-28 130.6 681 24.2
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.5e-27 129.0 201 44.8
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.9e-25 121.7 141 48.9
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.1e-25 121.3 412 28.9
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 6.7e-25 120.9 217 39.2
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 2.5e-24 119.0 426 29.8
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 3.3e-24 118.6 194 36.1
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.5e-21 109.8 91 57.1
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 7.4e-16 90.9 403 22.8
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 8.2e-15 87.4 167 35.9
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 2.6e-13 82.4 236 33.1
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.4e-11 73.9 80 47.5
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.7e-10 72.4 70 52.9
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 8.0e-10 70.9 89 49.4
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.3e-07 61.2 45 66.7
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 2.4e-06 59.3 74 45.9
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 4.1e-06 58.5 35 74.3


User provided reference genes

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