Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.4e-284 982.2 482 100.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.6e-262 906.4 482 92.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.9e-165 585.9 491 59.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.8e-160 569.3 496 59.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.2e-160 568.2 490 60.2
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 3.1e-159 565.8 492 59.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 6.9e-159 564.7 489 61.1
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.3e-157 560.5 491 59.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.7e-157 560.1 491 59.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.9e-156 556.6 495 57.6
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.2e-156 555.8 477 60.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.1e-155 553.1 495 58.6
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.3e-154 550.4 450 61.8
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.0e-154 549.3 452 61.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.9e-154 548.9 490 58.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.1e-154 548.5 491 58.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.1e-154 548.5 494 57.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 5.1e-154 548.5 495 58.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 8.7e-154 547.7 489 58.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.9e-153 546.6 462 61.0
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.9e-153 546.6 503 56.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.5e-153 546.2 493 58.4
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.5e-153 546.2 494 58.3
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.3e-153 545.8 479 59.1
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 5.6e-153 545.0 449 63.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.1e-152 543.1 450 62.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.1e-152 543.1 451 62.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.8e-152 542.0 477 59.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 8.1e-152 541.2 453 60.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.4e-151 540.4 491 58.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.4e-151 540.4 491 58.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.4e-151 540.4 438 61.4
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.8e-151 540.0 449 61.7
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 3.1e-151 539.3 464 60.3
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 5.3e-151 538.5 489 57.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 6.9e-151 538.1 445 60.2
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 6.9e-151 538.1 452 58.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.0e-150 536.6 448 61.6
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.5e-150 535.4 453 62.7
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.5e-150 535.4 453 62.7
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 4.5e-150 535.4 473 59.8
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 4.5e-150 535.4 460 57.8
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.5e-150 535.4 448 61.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.8e-150 535.0 451 59.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 9.9e-150 534.3 425 62.8
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 9.9e-150 534.3 461 59.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.4e-149 531.6 489 55.8
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 8.4e-149 531.2 499 56.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.4e-149 531.2 448 60.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.1e-148 530.8 449 60.6
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-148 529.6 487 57.7
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.6e-147 526.9 451 59.2
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.5e-147 525.8 416 63.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.0e-147 525.0 448 58.9
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-146 524.2 474 58.2
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.1e-146 521.9 448 59.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.5e-145 520.4 495 55.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-145 520.0 401 64.8
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 4.3e-145 518.8 494 55.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 4.8e-144 515.4 448 60.0
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.1e-143 514.2 494 54.3
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.4e-143 513.8 416 61.5
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.4e-143 513.1 463 56.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.0e-143 512.3 446 59.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.9e-143 511.5 485 56.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 9.0e-143 511.1 400 62.2
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 9.0e-143 511.1 523 54.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.6e-142 509.6 486 55.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 5.8e-142 508.4 448 59.4
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.8e-142 508.4 486 54.9
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.7e-141 506.9 401 61.8
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.2e-141 506.5 412 60.9
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.9e-141 506.1 489 55.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.9e-141 505.4 510 52.9
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.5e-140 503.1 510 53.9
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 5.5e-140 501.9 511 54.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.0e-139 498.4 483 54.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.9e-139 498.0 474 56.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.3e-138 497.3 489 55.0
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.0e-138 496.1 483 55.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.9e-138 495.7 406 60.8
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.1e-138 495.4 393 61.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 6.7e-138 495.0 398 62.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.7e-138 494.6 447 55.7
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.1e-137 494.2 406 60.6
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-137 493.8 396 61.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.6e-136 490.3 460 55.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.7e-136 489.2 448 55.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 4.8e-136 488.8 494 52.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 3.1e-135 486.1 525 50.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 9.0e-135 484.6 400 61.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 9.0e-135 484.6 447 54.4
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-134 484.2 425 56.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.9e-133 479.6 463 55.3
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.8e-133 479.2 411 56.9
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 4.9e-133 478.8 424 58.0
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.1e-132 477.6 401 58.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-132 476.5 429 54.8
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.5e-132 476.5 402 60.2
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 4.2e-132 475.7 429 54.8
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 4.2e-132 475.7 429 54.8
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 7.1e-132 474.9 420 56.9
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 7.1e-132 474.9 421 58.0
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.7e-131 473.0 426 54.9
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.7e-131 473.0 428 57.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.5e-131 472.6 424 57.3
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.6e-131 472.2 396 59.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 4.6e-131 472.2 413 57.1
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.3e-130 470.7 424 57.3
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.8e-130 470.3 413 55.7
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-130 469.9 384 59.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.0e-130 469.5 399 57.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.0e-130 469.5 406 56.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.0e-130 469.5 402 58.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.1e-130 468.8 487 50.9
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 6.7e-130 468.4 437 54.2
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 8.7e-130 468.0 504 51.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.1e-129 467.6 419 56.8
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-129 467.6 522 50.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.5e-129 467.2 382 60.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.5e-129 466.5 399 57.1
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.5e-129 466.5 425 58.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.7e-129 465.3 437 57.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 7.4e-129 464.9 416 56.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.4e-129 464.9 396 59.3
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-128 463.4 416 56.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.7e-128 462.6 480 51.9
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.7e-128 462.6 480 51.9
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.7e-128 462.6 480 51.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 8.2e-128 461.5 399 57.1
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-127 461.1 456 53.1
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 6.9e-127 458.4 438 53.9
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.9e-125 453.0 468 51.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.5e-124 448.7 403 56.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 4.6e-123 445.7 743 38.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.6e-123 445.7 399 55.4
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.5e-121 439.9 398 54.5
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.4e-121 438.3 584 45.5
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 9.4e-116 421.4 334 64.7
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 6.1e-115 418.7 402 53.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.0e-114 416.4 377 56.8
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.1e-113 414.5 337 63.8
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.6e-113 413.3 376 57.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.2e-112 408.3 319 64.9
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 8.2e-112 408.3 405 53.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.2e-104 383.6 309 60.5
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 5.2e-82 309.3 259 62.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.5e-78 296.2 205 67.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.2e-72 277.3 219 62.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 9.5e-68 261.9 216 59.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.6e-67 261.2 238 55.5
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.8e-67 260.4 240 57.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.1e-66 256.9 313 45.7
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 6.8e-66 255.8 255 51.8
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.5e-65 252.3 209 61.2
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.6e-49 200.7 446 32.5
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 5.1e-45 186.4 262 40.8
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.8e-43 179.9 414 34.8
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.7e-32 144.8 159 46.5
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 9.3e-31 139.0 267 38.6
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.8e-29 134.8 286 32.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.5e-28 131.7 586 22.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-28 131.0 168 43.5
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.9e-24 117.5 100 55.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 4.9e-24 116.7 117 48.7
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-21 108.2 88 59.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.5e-20 105.1 121 47.1
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.2e-15 87.0 102 45.1
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 1.8e-13 81.6 374 25.4
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-12 79.0 86 52.3
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.5e-12 77.8 61 57.4
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.5e-08 62.8 46 58.7


User provided reference genes

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