Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 2.5e-153 545.4 283 100.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.7e-104 383.3 282 67.4
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 3.7e-104 382.1 284 67.3
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 5.3e-103 378.3 288 66.3
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 1.6e-102 376.7 286 66.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 5.9e-102 374.8 282 66.7
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.3e-101 373.6 260 70.8
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 7.2e-100 367.9 286 63.3
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 7.2e-100 367.9 282 64.9
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 7.2e-100 367.9 283 65.7
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.2e-97 360.5 272 64.3
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.5e-97 360.1 282 64.5
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.5e-97 360.1 259 67.2
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 2.0e-97 359.8 260 65.8
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.7e-97 358.2 282 62.4
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.3e-96 357.1 259 66.0
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 2.8e-96 355.9 282 62.1
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.7e-96 355.5 282 63.5
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 3.7e-96 355.5 282 63.5
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 4.8e-96 355.1 282 63.5
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 6.3e-96 354.8 282 64.2
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.1e-95 354.0 275 64.4
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 2.4e-95 352.8 282 62.8
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 9.1e-95 350.9 282 63.1
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.2e-94 350.5 259 65.6
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 1.2e-94 350.5 286 61.9
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 2.7e-94 349.4 285 62.1
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 4.5e-94 348.6 274 62.4
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.5e-94 348.6 274 62.4
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 4.5e-94 348.6 282 63.1
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 5.9e-94 348.2 282 63.5
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 2.9e-93 345.9 282 61.0
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 2.9e-93 345.9 282 61.7
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 3.8e-93 345.5 259 66.0
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 3.8e-93 345.5 259 64.9
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 6.5e-93 344.7 284 62.0
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.9e-92 343.2 282 60.6
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.9e-92 343.2 262 65.6
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.9e-92 343.2 282 60.3
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.9e-92 343.2 282 61.0
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 4.2e-92 342.0 287 59.2
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 5.5e-92 341.7 259 63.3
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 5.5e-92 341.7 282 60.6
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 9.5e-92 340.9 279 62.0
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 2.8e-91 339.3 279 60.2
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 3.6e-91 339.0 284 60.2
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 3.6e-91 339.0 271 62.4
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 4.7e-91 338.6 285 59.3
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 6.1e-91 338.2 282 60.3
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 2.3e-90 336.3 285 59.6
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 5.2e-90 335.1 279 62.0
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 5.2e-90 335.1 282 59.9
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 5.2e-90 335.1 284 61.6
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 5.2e-90 335.1 282 60.3
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 6.8e-90 334.7 302 56.6
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.0e-89 333.2 283 59.0
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 3.4e-89 332.4 282 57.8
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 3.4e-89 332.4 282 59.9
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 3.4e-89 332.4 286 58.4
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 3.4e-89 332.4 276 60.9
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.4e-89 332.4 282 58.5
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 4.4e-89 332.0 284 60.6
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 4.4e-89 332.0 282 58.2
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 5.7e-89 331.6 270 59.6
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 7.5e-89 331.3 286 58.0
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 3.7e-88 328.9 283 59.7
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 3.7e-88 328.9 279 57.0
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.4e-87 327.0 285 58.2
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.4e-87 326.2 282 58.9
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.1e-87 325.5 283 59.4
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 7.0e-87 324.7 284 58.5
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.2e-86 323.9 282 58.5
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.6e-86 323.6 282 57.1
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.6e-86 323.6 283 60.1
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 2.7e-86 322.8 259 59.8
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 5.9e-86 321.6 282 57.1
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 7.8e-86 321.2 256 59.8
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 2.3e-85 319.7 282 56.4
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 2.3e-85 319.7 282 57.1
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 2.3e-85 319.7 352 49.4
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.9e-84 316.6 282 56.4
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 2.5e-84 316.2 282 55.0
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 4.3e-84 315.5 282 55.0
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 4.3e-84 315.5 237 64.1
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 9.5e-84 314.3 282 55.3
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.6e-83 313.5 283 56.5
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.6e-83 313.5 282 55.3
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 3.6e-83 312.4 285 54.7
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 3.6e-83 312.4 282 54.6
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 4.7e-83 312.0 348 50.9
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 8.0e-83 311.2 282 54.6
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 1.0e-82 310.8 270 56.3
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.0e-82 310.8 292 53.4
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 1.4e-82 310.5 282 53.9
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 1.8e-82 310.1 276 55.4
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 9.8e-81 304.3 260 59.6
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 5.4e-79 298.5 245 58.4
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 1.2e-78 297.4 276 54.7
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 3.5e-78 295.8 288 53.5
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.0e-77 292.7 282 56.4
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.5e-76 290.4 260 58.1
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 2.5e-76 289.7 259 55.2
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 1.6e-75 287.0 284 52.5
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 4.0e-74 282.3 217 64.1
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 8.9e-74 281.2 291 51.5
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 3.4e-73 279.3 282 51.4
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 4.4e-73 278.9 282 50.7
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 1.7e-72 276.9 282 52.1
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.1e-71 274.2 282 50.7
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 2.4e-71 273.1 281 53.7
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 1.7e-69 266.9 262 49.2
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.5e-68 261.2 293 47.8
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.5e-68 261.2 293 47.8
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.0e-66 255.8 285 47.0
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 8.3e-64 248.1 257 50.6
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.0e-61 239.6 288 44.4
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 2.1e-59 233.4 208 56.2
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 8.1e-59 231.5 225 52.0
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.5e-52 209.9 194 55.7
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.1e-50 204.5 226 50.4
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 1.5e-49 200.7 155 64.5
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 9.3e-47 191.4 151 62.9
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 8.7e-45 184.9 141 62.4
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 1.6e-43 180.6 165 54.5
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 1.4e-42 177.6 151 57.6
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 5.8e-41 172.2 169 52.1
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 6.4e-40 168.7 155 51.0
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.9e-39 167.2 121 71.1
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 4.2e-39 166.0 200 47.0
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.3e-37 161.0 139 59.0
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.9e-37 159.5 135 59.3
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 4.8e-35 152.5 133 57.1
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.1e-34 149.8 130 55.4
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.9e-33 144.8 121 62.8
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 2.9e-32 143.3 125 61.6
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 8.4e-32 141.7 108 63.0
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 2.1e-30 137.1 107 53.3
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 1.3e-29 134.4 152 49.3
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 8.7e-29 131.7 91 69.2
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 2.1e-27 127.1 90 65.6
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.0e-24 118.2 95 63.2
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 9.3e-23 111.7 61 82.0
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 7.9e-22 108.6 61 80.3
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.9e-21 106.3 242 31.8
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 8.7e-21 105.1 95 56.8
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.3e-19 101.3 56 80.4
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-19 100.9 249 28.1
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.2e-19 100.5 249 28.9
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 6.3e-19 99.0 254 29.5
arahy.Tifrunner.gnm1.ann1.WCYV83 Arachis hypogaea HOM05D003674 ORTHO05D004226 2.4e-18 97.1 65 61.5
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 4.1e-18 96.3 61 75.4
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.4e-17 93.2 252 28.6
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.2e-16 90.5 89 52.8
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.5e-16 89.0 291 26.8
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.5e-16 89.0 247 28.3
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 7.9e-14 82.0 275 27.3
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.5e-12 77.8 247 27.5
MSTRG.14333 Avicennia marina HOM05D003674 ORTHO05D004226 1.7e-11 74.3 78 53.8
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.8e-11 73.6 272 25.4
Nitab4.5_0009871g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.6e-06 56.6 48 54.2
Hma1.2p1_1836F.1_g304710 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 7.9e-06 55.5 48 60.4


User provided reference genes

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